HLA_Supertype: Assign HLA alleles to Supertype

In bosefalk/CTUtools: Common R functions for DKMS CTU

Description

Assigns a HLA allele to its Supertype (A01, A02 A24 etc). Allele which are classified as Unassigned in the paper are "Unassigned", alleles which do not appear in the paper at all are given "Unknown".

Usage

HLA_Supertype(allele, HLA)

Arguments

allele	HLA allele string vector as character, two fields only
HLA	"A" for HLA-A, "B" for HLA-B

Value

string vector with Supertype assignment for each row

Source

http://www.biomedcentral.com/1471-2172/9/1

Examples

dat <- data.frame(A_allele = c("01:01", "01:99", NA, "01:13"), 
       B_allele = c("07:02", "02:99", NA, "07:10"), stringsAsFactors = FALSE)
HLA_Supertype(dat$A_allele, HLA = "A")
HLA_Supertype(dat$B_allele, HLA = "B")

bosefalk/CTUtools documentation built on Feb. 4, 2022, 4:10 p.m.