Man pages for boydorr/RDiversity
Measurement and Partitioning of Similarity-Sensitive Biodiversity

ancestral_nodesancestral_nodes
chainsawFunction to cut the phylogeny to a specified depth from the...
check_partitionCheck partition matrix
check_phypartitioncheck_phypartition
check_similarityCheck similarity matrix
descendant_tipsdescendant_tips
dist2simDistance to similarity
distance-classdistance-class
distance-methodsGenerate distance object
geneidgeneid
genevecgenevec
hs_parametersHistorical species parameters
inddivCalculate individual-level diversity
metacommunity-classmetacommunity-class
metacommunity-methodsMetacommunity
metadivMetacommunity-level diversity
meta_gammaMetacommunity gamma diversity
norm_alphaNormalised alpha (low level diversity component)
norm_betaNormalised beta (low level diversity component)
norm_meta_alphaNormalised metacommunity alpha diversity
norm_meta_betaNormalised metacommunity beta diversity
norm_meta_rhoNormalised metacommunity rho diversity
norm_rhoNormalised rho (low level diversity component)
norm_sub_alphaNormalised subcommunity alpha diversity
norm_sub_betaNormalised subcommunity beta diversity
norm_sub_rhoNormalised subcommunity rho diversity
phy2branchPhylogenetic similarity
phy2distPhylogenetic pairwise tip distance matrix
phy_abundanceRelative abundance of historical species
phy_structCalculate phylogenetic structure matrix
powermeanCalculate power mean
power_meanPower mean of vector elements
powermean-classpowermean-class
raw_alphaRaw alpha (low level diversity component)
raw_betaRaw beta (low level diversity component)
raw_gammaGamma (low level diversity component)
raw_meta_alphaRaw metacommunity alpha diversity
raw_meta_betaRaw metacommunity beta diversity
raw_meta_rhoRaw metacommunity rho diversity
raw_rhoRaw rho (low level diversity component)
raw_sub_alphaRaw subcommunity alpha diversity
raw_sub_betaRaw subcommunity beta diversity
raw_sub_rhoRaw subcommunity rho diversity
rdiversity-packagerdiversity: diversity measurement in R
relativeentropyCalculate relative entropy
relativeentropy-classrelativeentropy-class
repartitionRepartition metacommunity
similarity-classsimilarity-class
similarity-methodsGenerate similarity object
smatrixPhylogenetic similarity matrix (ultrametric)
subdivCalculate subcommunity-level diversity
sub_gammaSubcommunity gamma diversity
summariseSummary function
tax2distGenerate taxonomic distance matrix
taxfactaxfac
taxidtaxid
taxmasktaxmask
taxvectaxvec
tbarCalculate T_bar
zmatrixSimilarity matrix
boydorr/RDiversity documentation built on Nov. 12, 2019, 2:02 p.m.