API for bozdaglab/PhenoGeneRanker
PhenoGeneRanker: A gene and phenotype prioritization tool
| Global functions | |
|---|---|
| AddMissingNodesToGraph | Source code |
| AddParameters | Source code |
| AssignGroupToConnectivityDF | Source code |
| CalculatePvalues | Source code |
| CheckSeeds | Source code |
| CreateBipartiteMatrix | Source code |
| CreateGeneTransitionMultiplexNetwork | Source code |
| CreatePhenoTransitionMultiplexNetwork | Source code |
| CreateSupraadjacencyMatrix | Source code |
| CreateSuprabipartiteMatrix | Source code |
| CreateTransitionMatrix | Source code |
| CreateTransitionMatrix.gene_pheno | Source code |
| CreateTransitionMatrix.pheno_gene | Source code |
| CreateTransitionMultiplexNetwork | Source code |
| CreateWalkMatrix | Man page Source code |
| GeneratePoolNodes | Source code |
| GenerateRandomSeedVector | Source code |
| GenerateRandomSeeds | Source code |
| GeometricMean | Source code |
| GetConnectivity | Source code |
| GetSeedScores | Source code |
| RandomWalkRestart | Man page Source code |
| RandomWalkRestartBatch | Source code |
| RandomWalkRestartSingle | Source code |
| RankPhenotypes | Source code |
| ReadNetworkLayers | Source code |
| ReadSeeds | Source code |
| ReadSettings | Source code |
| rankGenes | Source code |
