setup_ibis: Set the ibis.infile
In bpetersen18/ibisR: Inspect, Read, Edit, and Run "Agro-IBIS"

View source: R/setup_ibis.R

setup_ibis

R Documentation

Set the ibis.infile

Description

Set the ibis.infile

Usage

setup_ibis(
  model_path,
  file = "ibis_flag.infile",
  irestart = 0,
  irstyear = 1910,
  iyear0 = 1751,
  nrun,
  soilcspin = 0,
  flg_wrestart = 1,
  iyearout = 1,
  imonthout = 0,
  idailyout = 0,
  ihourlyout = 0,
  isimveg = 1,
  nstress = 0,
  isoybean = 0,
  imaize = 0,
  iwheat = 0,
  imiscanthus0 = 0,
  iswitchgrass0 = 0,
  ibsorghum = 0,
  irotation = 0,
  iholdsoiln = 0,
  management_prescribed = F,
  planting_input = "average",
  cultivar_input = "average",
  co2init = 4e-04,
  snorth,
  ssouth,
  swest,
  seast
)

Arguments

`model_path`	Path to the model directory.
`file`	Name of the ibis_flag.infile
`irestart`	0: not a restart run 1: restart run
`irstyear`	actual calendar year of restart run
`iyear0`	initial year of simulation (don't change for restart)
`nrun`	number of years in this simulation (change for restart)
`soilcspin`	0: no soil spinup, 1: acceleration procedure used
`flg_wrestart`	1(default): write restart files 0: no restart files
`iyearout`	0: no yearly output, 1: yearly output 2: yearly output, in a yearly basis
`imonthout`	0: no monthly output, 1: monthly output 2: monthly output, in a yearly basis
`idailyout`	0: no daily output, 1: daily output
`ihourlyout`	0: no hourly output, 1: hourly output
`isimveg`	0: static veg, 1: dynamic veg, 2: dynamic veg-cold start
`nstress`	0: no nitrogen stress, 1: apply nitrogen stress
`isoybean`	0: soybeans not grown 1: soybeans grown everywhere
`imaize`	0: maize not grown 1: maize grown everywhere
`iwheat`	0: wheat not grown 1: spring wheat grown everywhere 2: winter wheat
`imiscanthus0`	0: miscanthus not grown 1: miscanthus grown everywhere
`iswitchgrass0`	0: switchgrass not grown 1: switchgrass grown everywhere
`ibsorghum`	0: biomass sorghum not grown 1: biomass sorghum grown everywhere
`irotation`	0: none – 1: w. wheat/fallow – 2: corn/soy – 3: corn/corn/soy – 4: soy/w. wheat/corn – 5: soy/corn (opposite of 2) – 6: biomass sorghum/soybean
`iholdsoiln`	0: doesn't save soil inorganic N from restart 1: save inorganic soil N
`management_prescribed`	If true, used prescribed planting dates & cultivars, as read from maps; if false, use prognostic planting dates and cultivars
`planting_input`	Suffix on the planting date input file name (e.g., 'transient', 'detrended', 'linearized', or 'fixed'), for management_prescribed=true
`cultivar_input`	Suffix on the cultivar input file name (e.g., 'transient', 'fixed'), for management_prescribed=true
`co2init`	initial co2 concentration in mol/mol (ex: 0.000400 is equal to 400 ppm)
`snorth`	northern latitude for subsetting in/output
`ssouth`	southern latitude for subsetting in/output
`swest`	western longitude for subsetting in/output
`seast`	eastern longitude for subsetting in/output