brendanf/FUNGuildR: Look Up Guild Information for Fungi and Nematodes

This is a simple reimplementation of FUNGuild_v1.1.py. It queries the FUNGuild or NEMAGuild databases (http://www.stbates.org/guilds/app.php) and assigns trait information based on matching to a taxonomic classification. It does not include a copy of the FUNGuild or NEMAGuild databases, because they are continually updated as new information is submitted, but it does have methods to download them and store them as R objects to speed up repeated queries or to allow local queries without internet access.

Getting started

Package details

AuthorBrendan Furneaux, Zewei Song (Python version)
MaintainerBrendan Furneaux <[email protected]>
LicenseGPL-3
Version0.1.0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("brendanf/FUNGuildR")
brendanf/FUNGuildR documentation built on May 28, 2019, 8:59 p.m.