API for brendanf/LSUx
Cut rDNA Sequences Into Domains Using Covariance Models
| Global functions | |
|---|---|
| as_StockholmMSA | Source code |
| extract_LSU | Source code |
| extract_LSU.MultipleAlignment | Source code |
| extract_LSU.character | Source code |
| extract_amplicon | Source code |
| extract_rf_region | Source code |
| extract_rf_region.XString | Source code |
| extract_rf_region.character | Source code |
| find_amplicon | Man page Source code |
| find_primer | Man page Source code |
| gap_fill | Man page Source code |
| gap_free_width | Source code |
| gather_regions | Source code |
| itsx_result | Man page |
| lsux | Man page |
| map_position | Source code |
| map_position.MultipleAlignment | Source code |
| map_position.character | Source code |
| mark_ref_line | Source code |
| merge_5_8S | Man page Source code |
| modify_cm_rf | Source code |
| protect_names | Source code |
| protect_names.ShortRead | Source code |
| protect_names.character | Source code |
| protect_names.default | Source code |
| qsDNAss_to_sreadq | Source code |
| repair_unmatched_secondary_structure | Man page |
| spread_regions | Source code |
| sreadq_to_qsDNAss | Source code |
| truncate_alignment | Man page |
