gap_fill: Convert range from ungapped sequence to gapped sequence
In brendanf/LSUx: Cut rDNA Sequences Into Domains Using Covariance Models
View source: R/amplicon_extract.R
gap_fill R Documentation
Convert range from ungapped sequence to gapped sequence
Description
Convert range from ungapped sequence to gapped sequence
Usage
gap_fill(rstart, rend, gaps)
Arguments
rstart
(integer scalar)
the start point of the range
rend
(integer scalar)
the end point of the range
gaps
(IRanges object)
the locations of gaps in the gapped sequence.
Value
named integer of length two, with elements "start" and "end",
giving the coordinates in the gapped sequence which correspond to coordinates
"rstart" and "rend" in the ungapped sequence.
brendanf/LSUx documentation built on Oct. 10, 2024, 1:31 p.m.
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View source: R/amplicon_extract.R
| gap_fill | R Documentation |
Convert range from ungapped sequence to gapped sequence
Description
Convert range from ungapped sequence to gapped sequence
Usage
gap_fill(rstart, rend, gaps)
Arguments
rstart |
( |
rend |
( |
gaps |
( |
Value
named integer of length two, with elements "start" and "end",
giving the coordinates in the gapped sequence which correspond to coordinates
"rstart" and "rend" in the ungapped sequence.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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