API for brendanf/phylotax
Refine taxonomic assignment of environmental sequences using a taxonomic tree
| Global functions | |
|---|---|
| check_method | Source code |
| check_ranks | Source code |
| clade_taxon | Source code |
| count_assignments | Source code |
| deinterpolate_ranks | Source code |
| example_taxa | Man page Source code |
| example_tree | Man page Source code |
| extract_taxon | Man page |
| interpolate_ranks | Source code |
| keep_tips | Man page |
| lca_consensus | Man page |
| make_taxon_labels | Man page |
| new_phylotax_env | Source code |
| phylotax | Man page Source code |
| phylotax-package | Man page |
| phylotax_ | Source code |
| phylotax_to_phyloseq | Man page Source code |
| rank_factor | Source code |
| relabel_tree | Man page |
| sebacinales_oldnames | Man page |
| seqhash | Source code |
| seqhash.XStringSet | Source code |
| seqhash.character | Source code |
| taxonomy | Man page Source code |
| taxonomy_dada2 | Man page Source code |
| taxonomy_idtaxa | Man page |
| taxonomy_sintax | Man page Source code |
| taxtable | Man page |
| taxtable_dada2 | Man page |
| taxtable_idtaxa | Man page |
| taxtable_sintax | Man page |
| train_idtaxa | Man page |
