train_idtaxa: Train an IDTAXA model to a fasta file with...
In brendanf/phylotax: Refine taxonomic assignment of environmental sequences using a taxonomic tree
Description
Usage
Arguments
Value
Description
IDTAXA needs to train a model on a taxonomic reference database before it can
be used to classify sequences. This step can be time consuming, so it is
performed separately from the actual classification, and the result can be
saved for future analyses. This is a convenience function that makes it easy
to fit a model using DECIPHER::LearnTaxa() on the same reference
file that would be used for taxonomy_sintax().
Usage
1
train_idtaxa(fasta)
Arguments
fasta
(character string) path to a fasta file containing the
reference sequences, with headers formatted as required for SINTAX.
Value
an object of classes Taxa and Train, as required for
taxonomy_idtaxa() or DECIPHER::IdTaxa()
brendanf/phylotax documentation built on March 3, 2021, 2:21 p.m.
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Description Usage Arguments Value
Description
IDTAXA needs to train a model on a taxonomic reference database before it can
be used to classify sequences. This step can be time consuming, so it is
performed separately from the actual classification, and the result can be
saved for future analyses. This is a convenience function that makes it easy
to fit a model using DECIPHER::LearnTaxa() on the same reference
file that would be used for taxonomy_sintax().
Usage
1 | train_idtaxa(fasta)
|
Arguments
fasta |
( |
Value
an object of classes Taxa and Train, as required for
taxonomy_idtaxa() or DECIPHER::IdTaxa()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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