Files in brendanf/phylotax
Refine taxonomic assignment of environmental sequences using a taxonomic tree
.Rbuildignore
.github/workflows/check-bioc.yml
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/phyloseq.R
R/phylotax-package.R
R/phylotax.R
R/taxonomy.R
R/util.R
README.Rmd
README.md
codecov.yml
data-raw/download_sebacinales.R
data/sebacinales_oldnames.rda
inst/extdata/dacrymycetes.fasta.gz
inst/extdata/sebacinales.dada2.fasta.gz
inst/extdata/sebacinales.sintax.fasta.gz
inst/extdata/unknowns.fasta.gz
man/example_taxa.Rd
man/example_tree.Rd
man/extract_taxon.Rd
man/figures/README-unnamed-chunk-11-1.png
man/figures/README-unnamed-chunk-16-1.png
man/figures/README-unnamed-chunk-18-1.png
man/figures/README-unnamed-chunk-2-1.png
man/figures/README-unnamed-chunk-29-1.png
man/figures/README-unnamed-chunk-31-1.png
man/figures/README-unnamed-chunk-33-1.png
man/figures/README-unnamed-chunk-34-1.png
man/keep_tips.Rd
man/lca_consensus.Rd
man/make_taxon_labels.Rd
man/phylotax-package.Rd
man/phylotax.Rd
man/phylotax_to_phyloseq.Rd
man/relabel_tree.Rd
man/sebacinales_oldnames.Rd
man/taxonomy.Rd
man/taxtable.Rd
man/train_idtaxa.Rd
tests/testthat.R
tests/testthat/node_taxa.rds
tests/testthat/rejected.rds
tests/testthat/retained.rds
tests/testthat/test-check_ranks.R
tests/testthat/test-combotax.R
tests/testthat/test-consensus.R
tests/testthat/test-extract_taxon.R
tests/testthat/test-hash.R
tests/testthat/test-keep_tips.R
tests/testthat/test-phyloseq.R
tests/testthat/test-phylotax.R
tests/testthat/test-relabel_tree.R
tests/testthat/test-taxonomy.R
tests/testthat/tip_taxa.rds
