Man pages for brendanf/phylotax
Refine taxonomic assignment of environmental sequences using a taxonomic tree
| example_taxa | Example taxonomy assignments |
| example_tree | Simple phylogenetic tree for use in examples |
| extract_taxon | Extract a taxon by name from a 'phylotax' object |
| keep_tips | Keep only certain tips from a phylotax object |
| lca_consensus | Last common ancestor consensus |
| make_taxon_labels | Make labels summarizing the taxonomy of each sequence |
| phylotax | Assign taxon labels to nodes in a tree when there is a... |
| phylotax-package | phylotax: Refine taxonomic assignment of environmental... |
| phylotax_to_phyloseq | Convert assigned taxonomy and tree to a phyloseq object |
| relabel_tree | Replace tree tip labels |
| sebacinales_oldnames | Original genus-level names of the Sebacinales dataset |
| taxonomy | Assign taxonomy to nucleotide sequences |
| taxtable | Convert results from different taxonomic assignment... |
| train_idtaxa | Train an IDTAXA model to a fasta file with... |
