Man pages for brian-j-smith/boa
Bayesian Output Analysis Program (BOA) for MCMC
| boa.acf | Autocorrelation Function |
| boa.batchMeans | Batch Means |
| boa.chain | Session Lists of MCMC Sequences |
| boa.chain.add | Add MCMC Sequence |
| boa.chain.collapse | Concatenate MCMC Sequences |
| boa.chain.del | Delete MCMC Sequences |
| boa.chain.eval | Formulate New Parameter |
| boa.chain.gandr | Gelman and Rubin Convergence Diagnostics |
| boa.chain.import | Import MCMC Sequence |
| boa.chain.info | Information about MCMC Sequences |
| boa.chain.reset | Reset MCMC Sequences |
| boa.chain.subset | Subset MCMC Sequences |
| boa.chain.support | Set Support for Parameters |
| boa.getiter | Extract Iterations |
| boa.getparms | Extract Parameters |
| boa.geweke | Geweke Convergence Diagnostics |
| boa.gewekePwr | Geweke Spectral Density Estimation |
| boa.handw | Heidelberger and Welch Convergence Diagnostics |
| boa.hpd | Highest Probability Density Interval |
| boa.importASCII | Import ASCII Data |
| boa.importBUGS | Import BUGS Data |
| boa.importMatrix | Import ASCII Data |
| boa.init | Start Session |
| boa.iter | Extract Iteration Numbers |
| boa.license | Licensing Information |
| boa.load | Load Session |
| boa.menu | Interactive BOA Menu |
| boa.par | Global Parameters |
| boa.pardesc | Global Parameters Descriptions |
| boa.plot | Plot Parameters in MCMC Sequences |
| boa.plot.acf | Plot Autocorrelation Function |
| boa.plot.bandg | Plot Brooks and Gelman Multivariate Shrink Factors |
| boa.plot.close | Close Graphics Windows |
| boa.plot.density | Plot Density Functions |
| boa.plot.gandr | Plot Gelman and Rubin Shrink Factors |
| boa.plot.geweke | Plot Geweke Convergence Diagnostics |
| boa.plot.history | Plot Parameter Estimation Histories |
| boa.plot.open | Open Graphics Windows |
| boa.plot.par | Set Plotting Parameters |
| boa.plot.title | Add Plot Title |
| boa.plot.trace | Plot Trace Histories |
| boa.pnames | Extract Parameter Names |
| boa.print.acf | Print Autocorrelation Functions |
| boa.print.cor | Print Correlation Matrices |
| boa.print.gandr | Print Gelman and Rubin Convergence Diagnostics |
| boa.print.geweke | Print Geweke Convergence Diagnostics |
| boa.print.handw | Print Heidelberger and Welch Convergence Diagnostics |
| boa.print.hpd | Print Highest Probability Density Intervals |
| boa.print.info | Print Information about MCMC Sequences |
| boa.print.par | Print Global Parameters' Descriptions and Current Values |
| boa.print.randl | Print Raftery and Lewis Convergence Diagnostics |
| boa.print.stats | Print Summary Statistics |
| boa.quit | Quit Session |
| boa.randl | Raftery and Lewis Convergence Diagnostics |
| boa.save | Save Session |
| boa.sortiter | Sort by Iteration Numbers |
| boa.sortparms | Sort by Parameter Names |
| boa.stats | Summary Statistics |
| boa.transform | Transform Variables |
| boa.version | Version Information |
| colVars | Column Variances |
| line | BUGS Line Example |
