prune: Remove extinct leaf nodes from the population graph
In briandconnelly/mutationtree: Tree-based model of mutation dynamics
Description
Usage
Arguments
Value
Description
To help minimize the size of a graph, prune removes nodes that both
have zero abundance and are leaves (i.e., have no children). This second
condition is added so that extant lineages with extinct parents aren't
pruned. While more aggressive pruning is perhaps possible, this should remove
most unneeded nodes over time.
Usage
1
prune(population)
Arguments
population
A mutationtree population
Value
A pruned mutationtree population
briandconnelly/mutationtree documentation built on May 13, 2019, 5:14 a.m.
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Description Usage Arguments Value
Description
To help minimize the size of a graph, prune removes nodes that both
have zero abundance and are leaves (i.e., have no children). This second
condition is added so that extant lineages with extinct parents aren't
pruned. While more aggressive pruning is perhaps possible, this should remove
most unneeded nodes over time.
Usage
1 | prune(population)
|
Arguments
population |
A mutationtree population |
Value
A pruned mutationtree population
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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