ngchm: ngchm() : generates next gen heatmap

In broadinstitute/infercnvNGCHM: InferCNV Interface To Use Next Generation Clustered Heat Maps (NGCHM)

Description

Function for Generating a next-generation heatmap

Usage

ngchm(infercnv_obj, out_dir = ".", title = "NGCHM",
  gene_symbol = NULL, path_to_shaidyMapGen = NULL, x.range = NA,
  x.center = NA)

Arguments

infercnv_obj	An infercnv object
out_dir	output directory (default: '.')
title	title of the interactive heatmap (default: "NGCHM")
gene_symbol	##TODO (default: NULL)
path_to_shaidyMapGen	path to the shaidyMapGen jar file (default: NULL)
x.range	(integer) Values for minimum and maximum thresholds for heatmap coloring.
x.center	(integer) Center expression value for heatmap coloring.

broadinstitute/infercnvNGCHM documentation built on July 21, 2021, 11:49 a.m.