find_start_stop_codons: Function to identify potential start and stop codons
In brouwern/compbio4all: Datasets and helpful functions for learning bioinformatics and computational biology
Description
Usage
Arguments
Details
Examples
View source: R/find_start_stop_codons.R
Description
By Coghlan (2011) A little book of R for bioinformatics.
https://a-little-book-of-r-for-bioinformatics.readthedocs.io/en/latest/src/chapter7.html.
The functions was originally named findPotentialStartsAndStops().
Usage
1
Arguments
sq
DNA sequence
Details
Searches a DNA sequence using Biostrings::matchPattern(codon, sequence) to look for start and stop codons.
Currently only uses the standard genetic code.
Examples
1
2
3
4
5
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7
# Example sequence from Coghlan 2011
s1 <- "aaaatgcagtaacccatgccc"
# Returns a list with 2 elements
## 1) locations of codons
## 2) The codon
find_start_stop_codons(s1)
brouwern/compbio4all documentation built on Dec. 19, 2021, 11:47 a.m.
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Description Usage Arguments Details Examples
View source: R/find_start_stop_codons.R
Description
By Coghlan (2011) A little book of R for bioinformatics. https://a-little-book-of-r-for-bioinformatics.readthedocs.io/en/latest/src/chapter7.html. The functions was originally named findPotentialStartsAndStops().
Usage
1 |
Arguments
sq |
DNA sequence |
Details
Searches a DNA sequence using Biostrings::matchPattern(codon, sequence) to look for start and stop codons. Currently only uses the standard genetic code.
Examples
1 2 3 4 5 6 7 | # Example sequence from Coghlan 2011
s1 <- "aaaatgcagtaacccatgccc"
# Returns a list with 2 elements
## 1) locations of codons
## 2) The codon
find_start_stop_codons(s1)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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