alias_to_symbol_seurat: Convert aliases to official gene symbols in a Seurat Object

In browaeysrobin/nichenetr: Modeling Intercellular Communication by Linking Ligands to Target Genes with NicheNet

Convert aliases to official gene symbols in a Seurat Object

Description

alias_to_symbol_seurat Convert aliases to official gene symbols in a Seurat Object. Makes use of 'convert_alias_to_symbols'

Usage

alias_to_symbol_seurat(seurat_obj, organism)

Arguments

seurat_obj	Seurat object, v4 or below. For Seurat v5, a warning is thrown and the same object will be returned.
organism	Is Seurat object data from "mouse" or "human"

Value

Seurat object

Examples

## Not run: 
seurat_object_lite = readRDS(url("https://zenodo.org/record/3531889/files/seuratObj_test.rds"))
seurat_object_lite = seurat_object_lite %>% alias_to_symbol_seurat("human")

## End(Not run)

browaeysrobin/nichenetr documentation built on Sept. 9, 2024, 11:25 a.m.