Files in brunocontrino/DOSCHEDA
A DownStream Chemo-Proteomics Analysis Pipeline
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.gitignore
DESCRIPTION
NAMESPACE
R/accessor.R
R/boxplot.ChemoProtSet.R
R/corrPlot.R
R/data_doc.R
R/densityPlot.R
R/doscheda.R
R/doschedaApp.R
R/doschedaset.R
R/fitModel.R
R/makeReport.R
R/meanSdPlot.R
R/non_exported.R
R/pcaPlot.R
R/plot.ChemoProtSet.R
R/removePeptides.R
R/replicatePlot.R
R/runDoscheda.R
R/runNormalisation.R
R/setData.R
R/setParameters.R
R/volcanoPlot.R
README.md
data/doschedaData.rda
data/processedExample.rda
inst/NEWS
inst/rmd/report.Rmd
inst/shiny-examples/DOSCHEDA_app/CRAPOME_ECOLI
inst/shiny-examples/DOSCHEDA_app/CRAPOME_HUMAN
inst/shiny-examples/DOSCHEDA_app/CRAPOME_YEAST
inst/shiny-examples/DOSCHEDA_app/KinaseFile.csv
inst/shiny-examples/DOSCHEDA_app/Kinesis_ThermoFisher.csv
inst/shiny-examples/DOSCHEDA_app/app.R
inst/shiny-examples/DOSCHEDA_app/introduction.html
inst/shiny-examples/DOSCHEDA_app/report.Rmd
inst/shiny-examples/DOSCHEDA_app/sigmoidaltext.Rmd
inst/shiny-examples/DOSCHEDA_app/www/doschedaintensity.gif
inst/shiny-examples/DOSCHEDA_app/www/logo.png
inst/shiny-examples/DOSCHEDA_app/www/logochange.png
inst/shiny-examples/DOSCHEDA_app/www/logogifopt.gif
inst/shiny-examples/DOSCHEDA_app/www/stage1step1.gif
inst/shiny-examples/DOSCHEDA_app/www/stage1step2.gif
inst/shiny-examples/DOSCHEDA_app/www/stage1step3.gif
inst/shiny-examples/DOSCHEDA_app/www/stage1step4.gif
inst/shiny-examples/DOSCHEDA_app/www/styleupdates2.css
inst/shiny-examples/DOSCHEDA_app/www/titleogo.png
man/ChemoProtSet-class.Rd
man/boxplot-ChemoProtSet-method.Rd
man/corrPlot-methods.Rd
man/densityPlot-methods.Rd
man/doscheda.Rd
man/doschedaApp.Rd
man/doschedaData.Rd
man/fitModel-methods.Rd
man/getDatasets-methods.Rd
man/getFinal-methods.Rd
man/getInput-methods.Rd
man/getNorm-methods.Rd
man/getParameters-methods.Rd
man/makeReport.Rd
man/meanSdPlot-methods.Rd
man/pcaPlot-methods.Rd
man/plot.ChemoProtSet.Rd
man/processedExample.Rd
man/removePeptides-methods.Rd
man/replicatePlot-methods.Rd
man/runDoscheda.Rd
man/runNormalisation-methods.Rd
man/setData-methods.Rd
man/setParameters-methods.Rd
man/volcanoPlot-methods.Rd
tests/testthat.R
tests/testthat/test-normal.R
vignettes/Doscheda.Rmd
