volcanoPlot-methods: Volcano plot for objects of class ChemoProtSet

Description Usage Arguments Value See Also Examples

Description

Volcano plots designed to be run on objects of class 'ChemoProtSet' when a linear model has been applied.

Usage

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volcanoPlot(x, coefficient = "slope", avExprs = 0.2, pVal = 0.05, ...)

## S4 method for signature 'ChemoProtSet'
volcanoPlot(x, coefficient = "slope",
  avExprs = 0.2, pVal = 0.05, ...)

Arguments

x

object of class 'ChemoProtSet'

coefficient

coefficient of linear model to be plotted ('slope','intercept','quadratic')

avExprs

average expression cutoff

pVal

p-value cut-off

...

other plotting options

Value

volcano plot for objects of class ChemoProtSet

See Also

DoschedaSet

Examples

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ex <- processedExample
ex <- runNormalisation(ex)
ex <- fitModel(ex)
volcanoPlot(ex)

brunocontrino/DOSCHEDA documentation built on Sept. 15, 2020, 12:12 a.m.