bstaton1/codaTools: Utilities for Dealing with Posterior Samples Stored in mcmc.lists

Contains many shortcuts for subsetting, summarizing, plotting, and diagnosing particular nodes from an mcmc.list object. These objects are created from JAGS, BUGS, or STAN models, yet the author has found the default summarization and diagnostic capabilities rather clunky for plotting and subsetting particular portions of the posterior output. The attempt here is to standardize all work with MCMC output into \code{mcmc.list} objects, and to provide the infrastructure for a unified workflow. The functions in this package streamline the extraction, summarization, and diagnostics of particular nodes monitored after model fitting. Subsetting is made highly flexible by the incorporation of regular expression compatibility.

Getting started

Package details

Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
bstaton1/codaTools documentation built on Sept. 14, 2019, 1:28 a.m.