Files in btmartin721/ClineHelpR
Parses and Plots BGC and INTROGRESS Output
.Rbuildignore
.Rhistory
.gitattributes
.gitignore
ClinePlotR.Rproj
DESCRIPTION
LICENSE
NAMESPACE
R/.Rhistory
R/alphaBetaPlot.R
R/combine_bgc_output.R
R/genind2bgc.R
R/genind2introgress.R
R/genomicClinesXenvironment.R
R/get_bgc_outliers.R
R/get_important_rasters.R
R/join_bgc_gff.R
R/parseGFF.R
R/phiPlot.R
R/plot_outlier_ideogram.R
R/plot_traces.R
README.md
data/README
docker/.env
docker/Dockerfile
docker/build_docker.sh
docker/docker-compose.yml
docker/entrypoint.sh
environment.yml
img/alphaBetaContourPlot.png
img/alphaTrace.png
img/bad_LnL_convergence.png
img/code_for_flow_diagram_config_mermaid8.7.0.txt
img/code_for_flow_diagram_mermaid8.7.0.txt
img/docker_install_image.png
img/eatt_full_bgc_LnL_convergence.png
img/eatt_genes_hiXphi_alphaAndBeta.png
img/flowchart_ClinePlotR.png
img/genomicClineXlongitude.png
img/genomicClineXraster_bioclim1.png
img/hybridIndexXLongitude.png
img/hybridIndexXraster_bioClim1.png
img/ideogram_EATT.png
img/jupyter_notebook_screenshot.png
img/jupyter_notebook_screenshot_choosekernel.png
img/permutationImportance_plot.png
man/alphaBetaPlot.Rd
man/clinesXenvironment.Rd
man/combine_bgc_output.Rd
man/extractPointValues.Rd
man/genind2bgc.Rd
man/genind2introgress.Rd
man/get_bgc_outliers.Rd
man/join_bgc_gff.Rd
man/parseGFF.Rd
man/partition_raster_bg.Rd
man/phiPlot.Rd
man/plot_outlier_ideogram.Rd
man/plot_traces.Rd
man/prepare_rasters.Rd
man/runENMeval.Rd
man/runIntrogress.Rd
man/subsetIndividuals.Rd
man/summarize_ENMeval.Rd
scripts/.Rhistory
scripts/bgc_settings.txt
scripts/introgressPipeline.R
scripts/prepareDifferentRasters.R
scripts/run_bgc.sh
scripts/run_bgcPlotter.R
scripts/run_docker.sh
scripts/run_enmevalPipeline.R
scripts/vcf2bgc.py
tutorials/.ipynb_checkpoints/ClineHelpR_Tutorial-checkpoint.ipynb
tutorials/.ipynb_checkpoints/ClineHelpR_tutorial_bgc-checkpoint.ipynb
tutorials/.ipynb_checkpoints/ClineHelpR_tutorial_introgress-checkpoint.ipynb
tutorials/ClineHelpR_tutorial_bgc.ipynb
tutorials/ClineHelpR_tutorial_introgress.ipynb
tutorials/img/alphaBetaContourPlot.png
tutorials/img/alphaTrace.png
tutorials/img/bad_LnL_convergence.png
tutorials/img/code_for_flow_diagram_config_mermaid8.7.0.txt
tutorials/img/code_for_flow_diagram_mermaid8.7.0.txt
tutorials/img/docker_install_image.png
tutorials/img/eatt_full_bgc_LnL_convergence.png
tutorials/img/eatt_genes_hiXphi_alphaAndBeta.png
tutorials/img/flowchart_ClinePlotR.png
tutorials/img/genomicClineXlongitude.png
tutorials/img/genomicClineXraster_bioclim1.png
tutorials/img/hybridIndexXLongitude.png
tutorials/img/hybridIndexXraster_bioClim1.png
tutorials/img/ideogram_EATT.png
tutorials/img/jupyter_notebook_screenshot.png
tutorials/img/jupyter_notebook_screenshot_choosekernel.png
tutorials/img/permutationImportance_plot.png
