summarize_ENMeval: Function to summarize ENMeval output

In btmartin721/ClineHelpR: Parses and Plots BGC and INTROGRESS Output

Function to summarize ENMeval output

Description

Function to summarize ENMeval output

Usage

summarize_ENMeval(
  eval.par,
  minLat = 20,
  maxLat = 50,
  minLon = -110,
  maxLon = -40,
  examine.predictions = c("L", "LQ", "H", "LQH", "LQHP", "LQHPT"),
  examine.stats = c("auc.val", "auc.diff", "cbi.val", "or.mtp", "or.10p"),
  RMvalues = seq(0.5, 4, 0.5),
  nullmodel.iter = 100,
  plotDIR = "./plots",
  showPLOTS = FALSE,
  niche.overlap = FALSE,
  plot.width = 7,
  plot.height = 7,
  imp.margins = c(10, 4.1, 4.1, 2.1)
)

Arguments

eval.par	Object returned from runENMeval
minLat	Minimum latitude to plot for predictions
maxLat	Maximum latitude to plot for predictions
minLon	Minimum longitude to plot for predictions
maxLon	Maximum longitude to plot for predictions
examine.predictions	Character vector of feature classes to examine how complexity affects predictions
examine.stats	Character vector of stats to evaluate
RMvalues	Vector of non-negative RM values to examine how complexity affects predictions
nullmodel.iter	Integer; Number of iterations to perform with null model.
plotDIR	Directory to save plots to
showPLOTS	Boolean; Whether to print plots to screen
niche.overlap	Boolean. If TRUE, calculates pairwise niche overlap matrix
plot.width	Integer. Specify plot widths
plot.height	Integer. Specify plot heights
imp.margins	Integer vector. Margins of variable importance barplot. c(bottom, left, top, right)

Examples

summarize_ENMeval(eval.par = eval.par,
                 minLat = 20,
                 maxLat = 50,
                 minLon = -110,
                 maxLon = -40,
                 examine.predictions = c("L",
                                         "LQ",
                                         "H",
                                         "LQH",
                                         "LQHP",
                                         "LQHPT"),
                 RMvalues = seq(0.5, 4, 0.5),
                 plotDIR = "./plots",
                 showPLOTS = TRUE,
                 niche.overlap = FALSE,
                 plot.width = 7,
                 plot.height = 7,
                 imp.margins = c(10.0, 4.1, 4.1, 2.1))

btmartin721/ClineHelpR documentation built on Oct. 15, 2024, 5:05 a.m.