createLUT: Fix the track ids for multiple group

In burgerga/CPTrackR: Create unique track identifiers for CellProfiler tracking output

Fix the track ids for multiple group

Description

,

Usage

createLUT(data, group_vars, frame_var, obj_var, par_obj_var)

Arguments

data	The data frame with cellprofiler data
group_vars	The variable(s) which make up the movies for which the tracks should be fixed. Most commonly 'groupNumber' but can also include plate id.
frame_var	The variable which identifies separate frames in the group. Most commonly 'groupId'.
obj_var	The variable with the object number, for example, 'Nuclei_Number_Object_Number'
par_obj_var	The variable indicating the parent object number in the previous time frame, for example 'Nuclei_TrackObjects_ParentObjectNumber_30'

Details

Optionally in parallel.

Examples

## Not run: 
createLUT(data,
          group_vars = groupNumber,
          frame_var = groupInd,
          obj_var = Nuclei_Number_Object_Number,
          par_obj_var = Nuclei_TrackObjects_ParentObjectNumber_30)

with_progress({
lut <- createLUT(data,
                 group_vars = groupNumber,
                 frame_var = groupInd,
                 obj_var = Nuclei_Number_Object_Number,
                 par_obj_var = Nuclei_TrackObjects_ParentObjectNumber_30)
})

## End(Not run)

burgerga/CPTrackR documentation built on Jan. 29, 2024, 1:24 p.m.