| arch | Build genetic architecture with chromosomes, positions and... |
| BayesFactor | Bayesian model selection via Bayes factors. |
| BestPattern | Proximity of common genetic architecture patterns. |
| Bnapus | Cross structure for complete Brassica napus data |
| close | Measures closeness of genetic architectures to target. |
| coda | Coerce to an MCMC object for use with the coda package. |
| confound | Examine confounding of covariate with pseudomarkers. |
| covar | Examine GxE effect of covariates on main genetic effects. |
| data | Prepares data for qb.mcmc |
| diag | Marginal and model-conditional summaries of Bayesian interval... |
| epistasis | Density Plots for Models Showing Epistasis and GxE... |
| fisch | Eight QTL Stephens and Fisch simulated data |
| fitqtl | Stepwise backward elimination and anova comparison. |
| genoprob | Grid point and genotype probability computation method |
| hpd | Highest probability density (HPD) region. |
| hpdchr | Find highest probability density (HPD) region by Chromosome. |
| loci | Jittered plot of Bayesian QTL loci samples by chromosome |
| mcmc | Bayesian Mutiple Interacting QTL mapping using MCMC |
| meancomp | Examine grand mean and covariate MCMC samples. |
| model | Set up interacting QTL model for qb.mcmc |
| modes | Summaries of QTL modes by chromosome. |
| multloci | Summaries of multiple loci on a chromosome. |
| pairloci | Summaries of epistatic pairs of loci. |
| plot | Diagnostics plots for Bayesian interval mapping |
| plot.scanone | Plot or print qb.scanone object. |
| plot.scantwo | Two dimensional LOD Plot of Epistasis/joint |
| qbExample | MCMC sample for fake BC example |
| qbHyper | MCMC samples for hyper dataset from R/qtl |
| qb-internal | Internal qtlbim routines |
| qbSim | MCMC samples used in scan.pdf document |
| remove | Legacy update, remove or recover of qb object and associated... |
| scanone | Genome Scan for Main Loci Involved in Phenotypic Trait |
| scantwo | Genome Scan for Pairs of Loci Involved in Phenotypic Trait |
| sim | Simulates QTL related data for an F2 or BC cross. |
| sliceone | Genome Slice to detect QTL for Phenotypic Trait |
| slicetwo | Slices for epistatic pairs. |
| subset | Subsetting Bayesian interval mapping data |
| summary.scanone | Summary of qb.scanone or qb.scantwo object. |
| sweave | Run sweave to automate QTL search with MCMC samples. |
| varcomp | Variance components for Bayesian multiple QTL |
| vern | Eight week vernalization data for Brassica napus |
