slicetwo: Slices for epistatic pairs.

In byandell/qtlbim: QTL Bayesian Interval Mapping

Description

These routines refine QTL positions for epistatic pairs and show plots to reveal the nature of epistasis.

Usage

qb.slicetwo(qbObject, chr, pos, type.scan = "2logBF", width = 10, ...)
## S3 method for class 'qb.slicetwo'
summary(object, ...)
## S3 method for class 'qb.slicetwo'
print(x, ...)
## S3 method for class 'qb.slicetwo'
plot(x, byrow = TRUE, figs, auto.par = TRUE, col, lty, ...)

Arguments

qbObject	Object of class qb.
object	Object of class qb.slicetwo.
x	Object of class qb.slicetwo.
chr	Chromosome vector.
pos	Position vector corresponding to chr.
type.scan	Type of profile scan; see qb.scanone.
width	Width of slice.
byrow	Arrange plots by row (for slides) if TRUE.
figs	Plot only selected figures. Full set of c("profile", "effects", "cellmean", "effectplot") is default.
auto.par	Automatic setting of plot parameters for multiple plots if TRUE.
col,lty	colors and line types for cellmean and interaction plots
...	Extra plot options.

Author(s)

Brian S. Yandell, [e-mail]

References

http://www.qtlbim.org

See Also

qb.scantwo, qb.sliceone

Examples

data(qbExample)

temp <- qb.slicetwo(qbExample, chr = c(1,2), pos = c(45,12))
summary(temp)
plot(temp)

byandell/qtlbim documentation built on Dec. 19, 2021, 12:47 p.m.