API for byandell/qtlhot
Inference for QTL Hotspots
| Global functions | |
|---|---|
| CMSTCross | Man page |
| CMSTtests | Man page Source code |
| CMSTtestsList | Man page Source code |
| CausalRocCurve | Source code |
| CitTests | Man page Source code |
| CombineTests | Source code |
| CreateTraitsLodInt | Source code |
| DropMissing | Source code |
| FDRplot | Source code |
| FitAllTests | Man page Source code |
| GetCandReg | Man page Source code |
| GetCis | Source code |
| GetCisCandReg | Man page Source code |
| GetCoMappingTraits | Man page Source code |
| GetCommonQtls | Man page Source code |
| GetPowerFDR | Source code |
| GetPowerFdrMatrices | Source code |
| GetPvalsDistr | Source code |
| GetRocMatrix | Source code |
| GetSubsetForPlot | Source code |
| JoinTestOutputs | Man page Source code |
| MyMultipleTestingSim | Source code |
| MyMultipleTestingSim2 | Source code |
| N.WW.counts | Source code |
| NL.counts | Source code |
| PerformanceSummariesKo | Source code Source code |
| PrecTpFpMatrix | Man page Source code |
| SimCross1 | Source code |
| SimCross2 | Source code |
| SimCross3 | Source code |
| SimCross4 | Source code |
| SimCross5 | Source code |
| SimCross6 | Source code |
| SimCrossCausal | Man page Source code |
| SimCrossIndep | Man page Source code |
| add.phenos | Man page Source code |
| add.rug | Source code |
| big.phase0 | Man page Source code |
| big.phase1 | Source code |
| big.phase2 | Source code |
| big.phase3 | Source code |
| cat.scanone | Source code |
| causal.ROC.curve | Source code |
| count.thr | Source code |
| counts | Source code |
| do.big.phase2 | Source code |
| exceed.thr | Source code |
| filter.threshold | Man page Source code |
| findpeaks | Source code |
| get.Roc.Matrix | Source code |
| get.chr.pos | Source code |
| get.hotravel | Source code |
| get.hotscan | Source code |
| get.hotsize | Source code |
| get.hotspot | Source code |
| get.power.type1.prec.matrix | Source code |
| get.power.type1.prec.matrix.2 | Source code |
| get.tails | Source code |
| highlod | Man page Source code |
| highlod.thr | Source code |
| hotperm | Man page Source code |
| hotperm1 | Man page |
| hotsize | Man page Source code |
| hotsize.highlod | Man page Source code |
| hotsize.scanone | Man page Source code |
| include.hotspots | Man page Source code |
| lininterp | Source code |
| make.maxlod | Source code |
| max.highlod | Man page Source code |
| max.hotsize | Source code |
| mySimulations | Man page Source code Source code |
| myapprox | Source code |
| mycat | Source code |
| neqtl | Source code |
| p.adjust.np | Man page Source code |
| parallel.error | Source code |
| parallel.message | Source code |
| parallel.qtlhot | Man page Source code |
| performance.summaries.cit | Source code |
| performance.summaries.cmst | Source code |
| plot.bic.aic | Source code |
| plot.cit | Source code |
| plot.highlod | Man page Source code |
| plot.hotperm | Source code |
| plot.hotsize | Man page Source code |
| plot.non.par.cmst | Source code |
| plot.par.cmst | Source code |
| plot.par.cmst.joint | Source code |
| print.highlod | Man page Source code |
| print.hotperm | Man page Source code |
| print.hotsize | Man page Source code |
| print.summary.hotperm | Man page Source code |
| print.ww.perm | Man page Source code |
| pull.highlod | Man page Source code |
| pull.max | Source code |
| qm.approx | Source code |
| qtlhot.phase0 | Man page Source code |
| qtlhot.phase1 | Source code |
| qtlhot.phase2 | Source code |
| qtlhot.phase3 | Source code |
| quantile.highlod | Man page Source code |
| quantile.hotperm | Man page Source code |
| ravel.filter | Source code |
| ravel.scan | Source code |
| runningmean | Source code |
| scanone.permutations | Source code |
| sexbatch.covar | Source code |
| sim.hotspot | Man page Source code |
| sim.null.cross | Man page Source code |
| sim.null.pheno.data | Man page Source code |
| sliding.bar.plot | Source code |
| slidingbar.create | Source code |
| slidingbar.plot | Source code |
| smooth.neqtl | Source code |
| smoothall | Source code |
| smoothchr | Source code |
| summary.highlod | Man page Source code |
| summary.hotperm | Man page Source code |
| summary.hotsize | Man page Source code |
| summary.ww.perm | Man page Source code |
| ww.perm | Man page Source code |
| ww.perm.highlod | Source code |
| ww.perm.maxlod | Source code |
