dot-fillwithNA.2: fill the gaps for segment-level SCNA data with NA
In bzhanglab/genomicWidgets: Useful SCNA and DNA methylation analysis tools
Description
Usage
Arguments
Value
Description
fill the gaps for multiple samples' segment-level SCNA data with NA
Usage
1
.fillwithNA.2(segDf, totalChrRangeObj)
Arguments
segDf
segment-level SCNA data frame. This is usually the same input as GISTIC2. Make sure there are these columns "sample", "chromosome", "start", "end", "log2".
totalChrRangeObj
a GenomicRanges object, specifying the lengths of all chromosomes
Value
a data frame with gap-filled segment-level SCNA data
bzhanglab/genomicWidgets documentation built on Aug. 21, 2021, 10:49 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
fill the gaps for multiple samples' segment-level SCNA data with NA
Usage
1 | .fillwithNA.2(segDf, totalChrRangeObj)
|
Arguments
segDf |
segment-level SCNA data frame. This is usually the same input as GISTIC2. Make sure there are these columns "sample", "chromosome", "start", "end", "log2". |
totalChrRangeObj |
a GenomicRanges object, specifying the lengths of all chromosomes |
Value
a data frame with gap-filled segment-level SCNA data
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.