Sp: ExpressionSet: _Spathaspora passalidarum_ Grown on Glucose...

In bzunar/spathasporaExpression: Analyse gene expression in yeast Spathaspora passalidarum

Description

ExpressionSet: Spathaspora passalidarum Grown on Glucose and Xylose

Usage

Sp

Format

An ExpressionSet: Expression profiling by genome tiling array.

Investigation of whole genome gene expression level changes in Spathaspora passalidarum NRRL Y-27907 grown aerobically in xylose, compared to the same strain grown aerobically in glucose.

A six array study using total RNA recovered from three separate cultures of Spathaspora passalidarum NRRL Y-27907 grown in glucose and three separate cultures of Spathaspora passalidarum NRRL Y-27907 grown in xylose. Each array measures the expression level of 362,487 probes (average probe length 54.5 +/- 4.0 nt) tiled across the Spathaspora passalidarum NRRL Y-27907 genome with a median spacing distance of 29 nt. During data processing, probes are filtered to include only those probes corresponding to annotated protein-coding genes.

Source

Gene Expression Omnibus. https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE24853

Wohlbach DJ, Kuo A, Sato TK, Potts KM et al. Comparative genomics of xylose-fermenting fungi for enhanced biofuel production. Proc Natl Acad Sci U S A 2011 Aug 9;108(32):13212-7. PMID: 21788494 https://doi.org/10.1073/pnas.1103039108

Examples

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bzunar/spathasporaExpression documentation built on July 23, 2019, 1:37 a.m.