find_proto: find_proto
In c1au6i0/crispR: find protospacers
Description
Usage
Arguments
Value
Description
Function to identify all candidate guide (protospacer) sequences from a given genomic region.
Usage
1
find_proto(d_seq = "TGATCTACTAGAGACTACTAACGGGGATACATAG", l = 20, PAM = "NGG")
Arguments
d_seq
input DNA sequence for genomic region from which to identify protospacer sequences (in capital letters).
l
protospacer length.
PAM
sequence to match.
Value
a dataframe with columns.
start.
end.
protospacer sequence.
PAM sequence (e.g. CGG as the sequence that matched the PAM sequence NGG).
Strand (+ or -).
c1au6i0/crispR documentation built on Feb. 27, 2020, 12:42 a.m.
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Description Usage Arguments Value
Description
Function to identify all candidate guide (protospacer) sequences from a given genomic region.
Usage
1 | find_proto(d_seq = "TGATCTACTAGAGACTACTAACGGGGATACATAG", l = 20, PAM = "NGG")
|
Arguments
d_seq |
input DNA sequence for genomic region from which to identify protospacer sequences (in capital letters). |
l |
protospacer length. |
PAM |
sequence to match. |
Value
a dataframe with columns.
start.
end.
protospacer sequence.
PAM sequence (e.g. CGG as the sequence that matched the PAM sequence NGG).
Strand (+ or -).
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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