The goal of brapix is to provide eXtra tools for convenient bulk download breeding data and also do quick summaries and quality checks.
You can install brapix from github with:
# install.packages("devtools")
devtools::install_github("c5sire/brapix")
This is a basic example which shows you how to solve a common problem:
library(brapi)
#> This is the development version of the 'brapi' package!
#> You are using version 0.9.9036
#>
#> Please register any issues at: https://github.com/CIP-RIU/brapi/issues
library(brapix)
library(magrittr)
con <- ba_db()$germinate_test
loc <- ba_locations(con, pageSize = 10000)
#> URL call was: https://ics.hutton.ac.uk/germinate-demo/cactuar/brapi/v1/locations?page=0&pageSize=10000
#> Server status: ok!
#> Returning page 0 (max. 0) with max. 10000 items (out of a total of 508).
ba_describe(loc)
#> n locations = 508
#> n locations with missing lat/lon = 0 (0%)
gmp <- ba_genomemaps(con = con)
#> URL call was: https://ics.hutton.ac.uk/germinate-demo/cactuar/brapi/v1/maps/?page=0&pageSize=30&species=&type=&
#> Server status: ok!
#> Returning page 0 (max. 0) with max. 30 items (out of a total of 1).
gmp
#> # A tibble: 1 x 4
#> mapDbId name markerCount linkageGroupCount
#> * <chr> <chr> <int> <int>
#> 1 1 All markers 4985 7
ba_genomemaps_details(con, mapDbId = "1") %>% ba_chart()
#> URL call was: https://ics.hutton.ac.uk/germinate-demo/cactuar/brapi/v1/maps/1/
#> Server status: ok!
#> Returning page 0 (max. 0) with max. 1 items (out of a total of 1).
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.