README.md

In c5sire/licor: Tools for processing molecular data from a Licor sequencer

licor

The package provides currently minimal functionality to convert licor data to a more common data format of a matrix of 0 and 1.

The function identifies all unique base pair weights and sorts them ascending into columns. Genotypes are marked with 0 and 1 for absence or presence of the fragment.

Very much work in progress.

Installation

The following commands must be copied into the R console.

# This step is only once necessary of if you want to update
install.packages("devtools")

# Excecute this to make sure to have the latest version
devtools::install_github("licor", user="c5sire")

R console usage

The function will ask using a file dialog for a data archive to process. The file format has no header. The columns are 1. Name of genotype (or box) 2. Name of marker 3. and beyond: data columns

library(licor)

convertLicorData() #interactive modus

Html user interface

library(licor)

#This will create a local server and a html interface
runLicorMatrix()

c5sire/licor documentation built on May 13, 2019, 10:35 a.m.