The package provides currently minimal functionality to convert licor data to a more common data format of a matrix of 0 and 1.
The function identifies all unique base pair weights and sorts them ascending into columns. Genotypes are marked with 0 and 1 for absence or presence of the fragment.
Very much work in progress.
The following commands must be copied into the R console.
# This step is only once necessary of if you want to update
install.packages("devtools")
# Excecute this to make sure to have the latest version
devtools::install_github("licor", user="c5sire")
The function will ask using a file dialog for a data archive to process. The file format has no header. The columns are 1. Name of genotype (or box) 2. Name of marker 3. and beyond: data columns
library(licor)
convertLicorData() #interactive modus
library(licor)
#This will create a local server and a html interface
runLicorMatrix()
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