Files in c7rishi/hidgenclassifier
Functions for Bayesian hierarchical hidden genome classifier
.Rbuildignore
.Rhistory
.gitignore
DESCRIPTION
NAMESPACE
R/R_calc_minfo.R
R/RcppExports.R
R/calc_one_v_rest_auc.R
R/divide_rows_cols.R
R/extract_TMB.R
R/extract_cancer_response.R
R/extract_design.R
R/extract_design_mdesign_mcat.R
R/extract_design_mdesign_mcts.R
R/extract_design_mdesign_sbs96.R
R/fit_nn_helper.R
R/fit_predict_nnc.R
R/fit_predict_perturbed_smlc.R
R/fit_predict_rfc.R
R/fit_predict_smlc.R
R/fit_predict_svmc.R
R/hidgenclassifier-package.R
R/impact-data.R
R/individual_prediction_effect.R
R/odds_ratio_smlc.R
R/print_smlc.R
R/screen_variant_mi.R
R/supportfunctions.R
R/tcga-data.R
R/utils-pipe.R
R/utils.R
README.md
Rplots.pdf
data/impact.rda
data/tcga.rda
doc/impact_anlaysis.R
doc/impact_anlaysis.Rmd
doc/impact_anlaysis.html
figures/interactive-figure-1.html
hidgenclassifier.Rproj
man/adjust_Xnew.Rd
man/calc_minfo.Rd
man/calc_one_v_rest_auc.Rd
man/create_model.Rd
man/divide_rows.Rd
man/extract_cancer_response.Rd
man/extract_design.Rd
man/extract_design_mdesign_mcat.Rd
man/extract_design_mdesign_mcts.Rd
man/extract_design_mdesign_sbs96.Rd
man/extract_glmnet.Rd
man/extract_tmb.Rd
man/fit_nnc.Rd
man/fit_rfc.Rd
man/fit_smlc.Rd
man/fit_svmc.Rd
man/fitness.Rd
man/impact.Rd
man/indiv_predict_effect.Rd
man/new_nn.Rd
man/odds_ratio_mlogit.Rd
man/optimal_threshold.Rd
man/pipe.Rd
man/predict_nnc.Rd
man/predict_rfc.Rd
man/predict_smlc.Rd
man/predict_svmc.Rd
man/screen_variant_mi.Rd
man/tcga.Rd
man/tune_model.Rd
src/.gitignore
src/RcppExports.cpp
src/calc_minfo.cpp
src/calc_prob_dist.cpp
vignettes/impact_anlaysis.R
vignettes/impact_anlaysis.Rmd
vignettes/impact_anlaysis.html
