extract_design_mdesign_mcts: Extract Design-Metadesign (XU) matrix for a set of continuous...

In c7rishi/hidgenclassifier: Functions for Bayesian hierarchical hidden genome classifier

Extract Design-Metadesign (XU) matrix for a set of continuous meta-features stored in a maf file

Description

Extract Design-Metadesign (XU) matrix for a set of continuous meta-features stored in a maf file

Usage

extract_design_mdesign_mcts(
  maf,
  variant_col = "variant",
  mfeat_cols = "Histone_Marks",
  sample_id_col = "sample",
  ...
)

Arguments

maf	mutation annotation file – a data frame-like object containing columns for variant labels, sample IDs and continuous meta-feature variables. NOTE: uniqueness of rows of maf is assumed
variant_col	name of the column in maf containing variant labels.
mfeat_cols	names of columns in maf containing continuous meta-feature variables. Can be a vector.
sample_id_col	name of the column in maf containing tumor sample IDs.
...	Unused.

c7rishi/hidgenclassifier documentation built on June 14, 2024, 11:10 a.m.