API for c97sr/learnidd
A collection of functions useful for the study of infectious disease dynamics
| Global functions | |
|---|---|
| DA_condition | Man page Source code |
| H | Man page Man page Source code |
| S | Man page Source code |
| adm.apply.gen.model | Source code |
| adm.apply.seed | Man page Source code |
| adm.load.sheep.prep.sim | Man page Source code |
| adm.offset.kernel | Source code |
| adm.plot.farm.and.seeds | Man page Source code |
| adm.plot.gen | Man page Source code |
| adm.seed.sheep | Man page Source code |
| adm.setup.aux.mat | Man page Source code |
| adm.sheep.params | Man page Source code |
| augment_data | Man page Source code |
| calc_log_likelihood | Man page Source code |
| calc_prediction_accuracy | Man page Source code |
| calculateLogLikCluster_incubation | Man page Source code |
| calculateLogLikCluster_transmission | Man page Source code |
| calculateLogLik_incubation | Man page Source code |
| comp_seir | Man page Source code |
| extract_incidence | Man page Source code |
| extract_predicted_points | Man page Source code |
| extract_predicted_points_seir | Man page Source code |
| extract_subset_prediction | Man page Source code |
| extract_week_index | Man page Source code |
| f.incub | Man page Source code |
| fit_seir | Man page Source code |
| h | Source code |
| likelihood_profile_seir | Man page Source code |
| linear_regression | Man page Source code |
| logRatioProposal_DA | Man page Source code |
| plot_incidence | Man page Source code |
| plot_incidence_all | Man page Source code |
| plot_likelihood_profile | Man page Source code |
| run_MCMC | Man page Source code |
| run_MCMC_DA | Man page Source code |
| set_seir_params | Source code |
| solve_seir_model | Man page Source code |
| solve_seir_wrapper | Man page Source code |
| subset_incidence_data | Man page Source code |
