calculateLogLikCluster_transmission: calculate the contribution of a cluster to the log...
In c97sr/learnidd: A collection of functions useful for the study of infectious disease dynamics
calculateLogLikCluster_transmission R Documentation
calculate the contribution of a cluster to the log likelihood, for the model
of incubation and transmission
Description
calculate the contribution of a cluster to the log likelihood, for the model
of incubation and transmission
Usage
calculateLogLikCluster_transmission(p, data)
Arguments
p
named vector of parameter values. Contains elements "m.incub", the mean
incubation period;"beta", the transmission parameter; and "m.inf", the mean
infectious period
data
data frame with a single row, containing the columns
"time.onset.donor": the observed time of symptom onset for the donor;
"recipient.infected": 1 if the recipient was infected, 0 if not;
"time.infection.recipient": the inferred time at which the recipient was infected;
"time.onset.recipient": the observed time of symptom onset for the recipient
Value
the contribution of the cluster to the log likelihood
c97sr/learnidd documentation built on Jan. 12, 2025, 4:24 p.m.
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| calculateLogLikCluster_transmission | R Documentation |
calculate the contribution of a cluster to the log likelihood, for the model of incubation and transmission
Description
calculate the contribution of a cluster to the log likelihood, for the model of incubation and transmission
Usage
calculateLogLikCluster_transmission(p, data)
Arguments
p |
named vector of parameter values. Contains elements "m.incub", the mean incubation period;"beta", the transmission parameter; and "m.inf", the mean infectious period |
data |
data frame with a single row, containing the columns "time.onset.donor": the observed time of symptom onset for the donor; "recipient.infected": 1 if the recipient was infected, 0 if not; "time.infection.recipient": the inferred time at which the recipient was infected; "time.onset.recipient": the observed time of symptom onset for the recipient |
Value
the contribution of the cluster to the log likelihood
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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