Files in c97sr/learnidd
A collection of functions useful for the study of infectious disease dynamics
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/comp_seir.r
R/forecasting_practical.R
R/households.R
R/spatial_practical.R
data/donor_recipient_data.rda
data/fluIliCountryData.rda
data/spatial_data.rda
learnidd.Rproj
man/DA_condition.Rd
man/H.Rd
man/S.Rd
man/adm.apply.seed.Rd
man/adm.load.sheep.prep.sim.Rd
man/adm.plot.farm.and.seeds.Rd
man/adm.plot.gen.Rd
man/adm.seed.sheep.Rd
man/adm.setup.aux.mat.Rd
man/adm.sheep.params.Rd
man/augment_data.Rd
man/calc_log_likelihood.Rd
man/calc_prediction_accuracy.Rd
man/calculateLogLikCluster_incubation.Rd
man/calculateLogLikCluster_transmission.Rd
man/calculateLogLik_incubation.Rd
man/comp_seir.Rd
man/extract_incidence.Rd
man/extract_predicted_points.Rd
man/extract_predicted_points_seir.Rd
man/extract_subset_prediction.Rd
man/extract_week_index.Rd
man/f.incub.Rd
man/fit_seir.Rd
man/h.Rd
man/likelihood_profile_seir.Rd
man/linear_regression.Rd
man/logRatioProposal_DA.Rd
man/plot_incidence.Rd
man/plot_incidence_all.Rd
man/plot_likelihood_profile.Rd
man/run_MCMC.Rd
man/run_MCMC_DA.Rd
man/solve_seir_model.Rd
man/solve_seir_wrapper.Rd
man/subset_incidence_data.Rd
vignettes/basic_R.Rmd
vignettes/forecasting.Rmd
vignettes/forecasting_ans.Rmd
vignettes/practical_access_instructions.Rmd
vignettes/practical_access_instructions.md
vignettes/spatial.Rmd
vignettes/spatial_ans.Rmd
vignettes/transmission_inference.Rmd
vignettes/transmission_inference_ans.Rmd
