Man pages for cBioPortal/cgdsr
R-Based API for Accessing the MSKCC Cancer Genomics Data Server (CGDS)

cgdsr-CGDSConstruct a CGDS connection object
cgdsr-getCancerStudiesGet available cancer studies available in CGDS
cgdsr-getCaseListsGet available case lists for a specific cancer study
cgdsr-getClinicalDataGet clinical data for cancer study
cgdsr-getGeneticProfilesGet available genetic data profiles for a specific cancer...
cgdsr-getMutationDataGet mutation data for cancer study
cgdsr-getProfileDataRetrieves genomic profile data for genes and genetic...
cgdsr-packageCGDS-R : a library for accessing data in the MSKCC Cancer...
cgdsr-plotGeneric plot function for CGDS API data.
cgdsr-processURLInternal methods for CGDS library.
cgdsr-setPlotErrorMsgSet custom plot error message
cgdsr-setVerboseSet verbose logging level for CGDS function calls
cgdsr-testSimple test suite for CGDS object.
cBioPortal/cgdsr documentation built on May 11, 2017, 9:50 p.m.