cag1343/LORD
Long-read Analysis of transcription Termination Estimation and Recognition

Package index
Search the cag1343/LORD package
Vignettes
Functions
59
Source code
12
Man pages
48
Home
/
GitHub
/
cag1343/LORD: Long-read Analysis of transcription Termination Estimation and Recognition
/
Man pages

Man pages for cag1343/LORD
Long-read Analysis of transcription Termination Estimation and Recognition

add3pEndDatabase-IsoformDatabase-methodTitle
addPromoterDatabase-IsoformDatabase-methodTitle
calculatePromoterDominanceCaculate promoter dominance
countLinkscount full length reads to 5'-'3 isoforms
dominance-LATER-methoddominance
dominance-set-LATER-methodTitle
estimatePromoterDominanceestimatePromoterDominance
estimateTranscriptionalBiasestimateTranscriptionalBias transcriptional bias estimates as...
IsoformDatabaseBuild isoform database object
IsoformDatabase-classS4 class of promoter database.
isoform_database-setisoform_database<-
isoform_database-set-IsoformDatabase-methodisoform_database
LATERBuilder LATER
LATER-classS4 class of promoter database.
plotGeneBiasplotGeneBias
plotTranscriptionalBiasplotTranscriptionalBias
prepareForCountEndsprepare counts trimming the reads to their most 3' into a 1...
prepareForCountStartsprepare counts trimming the reads to their most 5' into a 1...
prepareIsoformDatabaseprepareIsoformDatabase Create a reference database of all...
prepareLinksDatabaseprepareLinksDatabase Create a reference database of all...
readAssignments-LATER-methodreadAssignments
readTESassignmentTitle
readTSSassignmentTitle
result-LATER-methodresult
result-set-LATER-methodresult
showshow
showGeneTitle
showGene-IsoformDatabase-methodsshowgene
show-LATER-methodshow
showLinksshowLinks
showLinks-IsoformDatabase-methodshowLinks
showLinks-setisoform_database<-
showLinks-set-IsoformDatabase-methodisoform_database
stats-LATER-methodstats
stats-set-LATER-methodstats
strandSortSort by strand
TESCoordinate.baseTESCoordinate.base
TESCoordinate.base-IsoformDatabase-methodTESCoordinate.base M
TESCoordinate.base-setTESCoordinate.base
TESCoordinate.base-set-IsoformDatabase-methodTitle
TESCoordinate.binsTESCoordinate.bins
TESCoordinate.bins-IsoformDatabase-methodTESCoordinate.base
TESCoordinate.bins-setTESCoordinate.bins
TSSCoordinate.baseTitle
TSSCoordinate.base-IsoformDatabase-methodTSSCoordinate.base
TSSCoordinate.binsTSSCoordinate.bins
TSSCoordinate.bins-IsoformDatabase-methodTSSCoordinate.bins
TSSCoordinate.bins-setTitle
cag1343/LORD documentation built on Dec. 11, 2024, 12:50 a.m.

R Package Documentation

rdrr.io home R language documentation Run R code online

Browse R Packages

CRAN packages Bioconductor packages R-Forge packages GitHub packages

We want your feedback!

Note that we can't provide technical support on individual packages. You should contact the package authors for that.
GitHub issue tracker
ian@mutexlabs.com
Personal blog

 
Embedding an R snippet on your website

Add the following code to your website.

For more information on customizing the embed code, read Embedding Snippets.

Close