R/NanoTube.R

In calebclass/NanoTube: An Easy Pipeline for NanoString nCounter Data Analysis

#' NanoTube
#' 
#' A package for NanoString nCounter gene expression data processing,
#' analysis, and visualization.
#' 
#' @name NanoTube
#' @docType package
#' @import Biobase ggplot2 fgsea limma reshape
#' @importFrom stats cor cutree dist hclust median model.matrix p.adjust 
#'             prcomp sd t.test
#' @importFrom utils read.csv read.delim unzip untar write.table
#' @importFrom methods is
NULL

#' Example pathway database
#' 
#' A list object containing example gene sets from WikiPathways.
#' 
#' @name ExamplePathways
#' @docType data
#' @keywords datasets
#' @usage data(ExamplePathways)
#' @format A list object with 30 vectors of gene symbols, for 30 pathways
NULL

#' Example results from runLimmaAnalysis
#' 
#' Results of runLimmaAnalysis using the example data set GSE117751 
#' (in extdata).
#' 
#' @name ExampleResults
#' @docType data
#' @keywords datasets
#' @usage data(ExampleResults)
#' @format An MArrayLM object from limma
NULL