In camlab-bioml/cancersea: Curated gene sets from CancerSEA

knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>"
)

suppressPackageStartupMessages({
  library(cancersea)
  library(tibble)
})

Find available pathways

data("available_pathways")
available_pathways

Get the gene se for a given pathway

Note that genes are only those positively associated with each pathway (ie upregulated).

data("angiogenesis")
angiogenesis

Technical

sessionInfo()

camlab-bioml/cancersea documentation built on April 1, 2020, 12:03 a.m.