R/cancersea.R

#' Available cancer-related pathways in this package
#'
#'
"available_pathways"

#' Curated CancerSEA gene sets
#'
#' To load, call \code{data(pathway_name)}.
#'
#'
#' @format A tibble with columns ensembl_gene_id and symbol
#'
#' @source \url{http://biocc.hrbmu.edu.cn/CancerSEA/goDownload}
#'
#' @rdname cancersea
"angiogenesis"

#' Curated CancerSEA gene sets
#' @rdname cancersea
"apoptosis"

#' Curated CancerSEA gene sets
#' @rdname cancersea
"cell_cycle"

#' Curated CancerSEA gene sets
#' @rdname cancersea
"differentiation"

#' Curated CancerSEA gene sets
#' @rdname cancersea
"dna_damage"

#' Curated CancerSEA gene sets
#' @rdname cancersea
"dna_repair"

#' Curated CancerSEA gene sets
#' @rdname cancersea
"emt"

#' Curated CancerSEA gene sets
#' @rdname cancersea
"hypoxia"

#' Curated CancerSEA gene sets
#' @rdname cancersea
"inflammation"

#' Curated CancerSEA gene sets
#' @rdname cancersea
"invasion"

#' Curated CancerSEA gene sets
#' @rdname cancersea
"metastasis"

#' Curated CancerSEA gene sets
#' @rdname cancersea
"proliferation"

#' Curated CancerSEA gene sets
#' @rdname cancersea
"quiescence"

#' Curated CancerSEA gene sets
#' @rdname cancersea
"stemness"
camlab-bioml/cancersea documentation built on April 1, 2020, 12:03 a.m.