Man pages for camposfa/paceR
Tools for working with the PACE Database
| area.BRB | Updated BRB code |
| biomass_avail_hr | Calcuate available biomass per homerange using the indices as... |
| biomass_avail_sr | Calcuate available biomass using the indices as weights. |
| biomass_max_sr | Calculate max potential biomass for each species (if... |
| biomass_monthly_summary | Summarize available biomass data by summing species in each... |
| figs_to_sf | Transforms fig table into a sf-dataframe |
| fpv_get_min_dbh_sr | Set minimum DBHs for fruit-producing trees of each species. |
| fpv_subset_pheno_sr | Get relevant FPV data corresponding to pheno species |
| get_biography | Get table with biography from birth until death,... |
| get_biomass_sr | Calculate available biomass. This function is a wrapper for... |
| get_focaldata_MB | Get focal behaviour recorded by Mackenzie Bergstrom for her... |
| get_focaldata_SC | Get focal behaviour recorded by Sarah Carnegie's for her PhD... |
| get_habitat_use | Calculate habitat utilization from ranging data and... |
| get_homerange | Calculate home ranges for time intervals |
| get_horizontal_transects | Get gps points for horizontal transects |
| get_infant_table | Get table with infants including the risk of infanticide as a... |
| get_infant_table.old | Get table with infants including the risk of infanticide as a... |
| get_pace_tbl | Get any table from PACE without the annoying warning... |
| get_proximity_MB | Get proximity scans recorded by Mackenzie Bergstrom for her... |
| get_sf_from_hu | Creates a 'simple feature' dataframe from the habitat... |
| getv_AlphaFemaleTenure | Get table with alpha female tenures. |
| getv_AlphaMaleTenure | Get table with alpha male tenures. |
| getv_CensusMonthly | Get table with group-census data |
| getv_DominanceHierarchy | Get table with Dominance hierachies. |
| get_vertical_transects | Get gps points for vertical transects |
| getv_Individual | Get table with Individual data |
| getv_Phenology | Get table with Phenology data |
| hello | Hello, World! |
| load_hr_biomass_packages | Loads various packages required to estimate biomass per... |
| load_pace_packages | #' Loads various data munging packages. |
| pheno_avail_indices_sr | Calculate availability indices for Santa Rosa using different... |
| pheno_prep_sr | Convert a Santa Rosa phenology table from long to wide format... |
| plot_biomass_monthly | Heatmap plots of total monthly biomass with species combined |
| plot_biomass_species | Generate a heatmap of availabile fruit biomass for each... |
| plot_fpv_dbh | Create boxplots of DBHs for trees in FPV data for each... |
| plot_pheno_indices | Generate a heatmap of fruit availability indices. |
| sqrt_sign_trans | A signed square-root transform. This transform can be useful... |
| theme_internal_ticks | A ggplot2 theme with internal tick marks. |
| theme_internal_ticks_x2 | A doubled version of theme_internal_ticks. |
| theme_journal | A clean ggplot2 theme with no internal grid lines. |
| theme_journal_x2 | A doubled version of theme_journal. |
| transect_subset_sr | Get relevant transect data corresponding to pheno species.... |
| tr_to_polys | Transforms start- and end-points of transects into polygons... |
| vector.averaging | Calculate mean resultant vector from directional data,... |
