Man pages for cancer-genomics/plasmasv
Methods for identification of tumor-specific structural variants in plasma
| allFeatures | Compute all features for pairs of breakpoints |
| breakpointGC | Determines the GC content surrounding structural variant... |
| distanceToFeature | Determines the distance to a genomic feature |
| featureDensity | Determines the density of genomic features surrounding... |
| featureValue | Grabs a value for an interval that overlaps each breakpoint |
| nearbyBreakpoints | Count the number of times that a breakpoint is near an... |
| sameFeatureElement | Determine if both breakpoints are within the same feature... |
| svSize | Determines the structural variant size |
| svType | Determines the structural variant type |
| withinFeature | Determines the number of breakpoints within a genomic feature |
