sameFeatureElement: Determine if both breakpoints are within the same feature...

In cancer-genomics/plasmasv: Methods for identification of tumor-specific structural variants in plasma

Description

Determine if both breakpoints are within the same feature element

Usage

sameFeatureElement(query, feature, feature.name)

Arguments

query	A GRanges object containing breakpoint 1 with a GRanges for breakpoint 2 in a metadata column caled linked.to
feature	A GRanges object containing the feature of interest.
feature.name	A character vector of length 1 indicating the name of the feature being evaluated. This value is only used to create the output table.

Examples

data(test_sv)
data(tad)
sameFeatureElement(query = test_sv, feature = tad, feature.name = 'tad')

cancer-genomics/plasmasv documentation built on May 15, 2020, 11:35 a.m.