R/help.R

In cancer-genomics/svplots: Visualization tools for structural variant analyses

#' Tools for visualizing structural variant sequence data
#'
#' Functions and methods for visualizing structural variant sequence data
#'
#' @docType package
#' @name svplots
#' @import methods
#' @import trellis
#' @import GenomicRanges
#' @import GenomeInfoDb
#' @import grid
#' @import ggplot2
#' @import ggbio
#' @import graph
#' @importFrom lattice lsegments
#' @importFrom gridExtra grid.arrange
#' @importMethodsFrom S4Vectors elementNROWS
#' @importMethodsFrom GenomicAlignments first last
#' @importFrom IRanges IRanges
#' @importFrom Rgraphviz layoutGraph plot
#' @importMethodsFrom Rgraphviz renderGraph
#' @importFrom RColorBrewer brewer.pal
#' @importFrom biovizBase getIdeoGR
#' @importMethodsFrom SummarizedExperiment rowRanges assays
#' @importFrom SummarizedExperiment SummarizedExperiment
#' @import tibble
#' @import magrittr
#' @import dplyr
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