nobuild/package_template.R

In caravagn/CNAqc: CNAqc - Copy Number Analysis quality check

importFrom("grDevices", "dev.off", "pdf")
importFrom("stats", "complete.cases", "dbinom", "density", "end",
           "glm", "integrate", "median", "offset", "qbinom",
           "quantile", "setNames", "start")

usethis::use_import_from('stats', 'glm')
usethis::use_import_from('stats', 'integrate')
usethis::use_import_from('stats', 'median')
usethis::use_import_from('stats', 'qbinom')
usethis::use_import_from('stats', 'quantile')
usethis::use_import_from('stats', 'setNames')
usethis::use_import_from('grDevices', 'dev.off')
usethis::use_import_from('grDevices', 'pdf')
usethis::use_import_from('utils', 'capture.output')
usethis::use_import_from('utils', 'object.size')
usethis::use_import_from('tibble', 'is_tibble')
usethis::use_import_from('tidyr', 'pivot_wider')

usethis::use_import_from('ggplot2', 'ggplot')
usethis::use_import_from('ggplot2', 'aes')
usethis::use_import_from('ggplot2', 'ggplot_build')
usethis::use_import_from('ggplot2', 'geom_blank')
usethis::use_import_from('ggplot2', 'geom_histogram')
usethis::use_import_from('ggplot2', 'geom_tile')
usethis::use_import_from('ggplot2', 'geom_point')
usethis::use_import_from('ggplot2', 'geom_smooth')
usethis::use_import_from('ggplot2', 'geom_segment')
usethis::use_import_from('ggplot2', 'geom_rect')
usethis::use_import_from('ggplot2', 'geom_hline')
usethis::use_import_from('ggplot2', 'geom_vline')
usethis::use_import_from('ggplot2', 'geom_text')
usethis::use_import_from('ggplot2', 'geom_line')
usethis::use_import_from('ggplot2', 'geom_abline')
usethis::use_import_from('ggplot2', 'geom_bar')
usethis::use_import_from('ggplot2', 'theme_light')
usethis::use_import_from('ggplot2', 'unit')

usethis::use_import_from('ggplot2', 'labs')
usethis::use_import_from('ggplot2', 'xlim')
usethis::use_import_from('ggplot2', 'ylim')
usethis::use_import_from('ggplot2', 'scale_fill_manual')
usethis::use_import_from('ggplot2', 'scale_color_manual')
usethis::use_import_from('ggplot2', 'ylim')
usethis::use_import_from('ggplot2', 'guides')
usethis::use_import_from('ggplot2', 'element_rect')
usethis::use_import_from('ggplot2', 'guide_legend')

usethis::use_import_from('gtools', 'mixedsort')
usethis::use_pipe()

usethis::use_package('dplyr')
usethis::use_package('ggplot2')
usethis::use_package('ggpubr')
usethis::use_package('ggrepel')
usethis::use_package('cli')
usethis::use_package('cli')
usethis::use_package('crayon')
usethis::use_package('BMix')
usethis::use_package('vcfR')
usethis::use_package('clisymbols')
usethis::use_package('RColorBrewer')
usethis::use_package('VariantAnnotation')
usethis::use_package('peakPick')



usethis::use_import_from('dplyr', 'mutate')


importFrom("grDevices", "dev.off", "pdf")