fit_mutations: Fit the mutations clustering

In caravagnalab/LineaGT: lineaGT

Fit the mutations clustering

Description

Fit the mutations clustering

Usage

fit_mutations(
  x,
  vaf.df = NULL,
  infer_phylo = TRUE,
  min_frac = 0,
  max_IS = NULL,
  highlight = list()
)

Arguments

x	a mvnmm object.
vaf.df	dataframe with mutations data.
infer_phylo	a Boolean indicating whether to infer also the phylogenetic evolution per cluster of ISs.
min_frac	add
max_IS	add
highlight	add

Value

A mvnmm object with the additional list x.muts containing the estimated subclones from somatic mutations.

caravagnalab/LineaGT documentation built on June 13, 2025, 1:58 p.m.