README.md
In cardiomoon/rrtable: Reproducible Research with a Table of R Codes
title: ' R package rrtable '
subtitle: ' Reproducible Research with a Table of R codes '
author: ' Keon-Woong Moon '
date: "2018-04-15"
output:
html_document:
keep_md: true
require(moonBook)
require(ztable)
require(rrtable)
require(ggplot2)
Introduction
If you are a data scientist or researcher, you will certainly be interested in reproducible research. R package rrtable makes it possible to make reports with HTML, LaTex, MS word or MS Powerpoint formats from a table of R codes.
Package Installation
You can install R package rrtable with the following command.
if(!require(devtools)){ install.packages("devtools") }
devtools::install_github("cardiomoon/rrtable")
Package Loading
You can load the rrtable package with the following R command.
require(rrtable)
Sample Data
Sample data sampleData3 is included in rrtable package. You can see the sampleData3 by following R command.
str(sampleData3)
'data.frame': 15 obs. of 5 variables:
$ type : chr "title" "subtitle" "author" "text" ...
$ title : chr "" "" "" "Introduction" ...
$ text : chr "R package `rrtable`" "Reproducible Research with a Table of R codes" "Keon-Woong Moon" "If you are a data scientist or researcher, you will certainly be interested in reproducible research. R package"| __truncated__ ...
$ code : chr "" "" "" "" ...
$ option: chr "" "" "" "" ...
Paragraph
You can make a paragraph with this data
df2flextable2( sampleData3 ,vanilla= FALSE )
type
title
text
code
option
title
R package `rrtable`
subtitle
Reproducible Research with a Table of R codes
author
Keon-Woong Moon
text
Introduction
If you are a data scientist or researcher, you will certainly be interested in reproducible research. R package `rrtable` makes it possible to make reports with HTML, LaTex, MS word or MS Powerpoint formats from a table of R codes.
header2
Package Installation
You can install R package `rrtable` with the following command.
if(!require(devtools)){ install.packages("devtools") }
devtools::install_github("cardiomoon/rrtable")
echo=TRUE, eval=FALSE
header2
Package Loading
You can load the `rrtable` package with the following R command.
require(rrtable)
echo=TRUE
header2
Sample Data
Sample data sampleData3 is included in rrtable package. You can see the sampleData3 by following R command.
str(sampleData3)
echo=TRUE, eval=TRUE
Data
Paragraph
You can make a paragraph with this data
sampleData3
landscape=TRUE
mytable
mytable object
You can add mytable object with the following R code.
mytable(Dx~.,data=acs)
plot
Plot
You can insert a plot into your document.
plot(Sepal.Width~Sepal.Length,data=iris)
ggplot
ggplot
You can insert a ggplot into a document
ggplot(iris,aes(x=Sepal.Length,y=Sepal.Width,color=Species))+ geom_point()
Rcode
R code
You can insert the result of R code. For example, you can insert the result of regression analysis.
fit=lm(mpg~wt*hp,data=mtcars)
summary(fit)
2ggplots
Two ggplots
You can insert two parallel ggplots with the following code.
ggplot(iris,aes(Sepal.Length,Sepal.Width))+geom_point()
ggplot(iris,aes(Sepal.Length,Sepal.Width,colour=Species))+ geom_point()+guides(colour=FALSE)
2plots
Two plots
You can insert two parallel plots with the following code.
hist(rnorm(1000))
plot(1:10)
header2
HTML Report
You can get report with HTML format(this file) by following R command.
data2HTML(sampleData3)
echo=TRUE, eval=FALSE
mytable object
You can add mytable object with the following R code.
mytable2flextable( mytable(Dx~.,data=acs) ,vanilla= FALSE )
Dx
NSTEMI
STEMI
Unstable.Angina
p
(N=153)
(N=304)
(N=400)
age
64.3 ± 12.3
62.1 ± 12.1
63.8 ± 11.0
0.073
sex
0.012
- Female
50 (32.7%)
84 (27.6%)
153 (38.2%)
- Male
103 (67.3%)
220 (72.4%)
247 (61.8%)
cardiogenicShock
< 0.001
- No
149 (97.4%)
256 (84.2%)
400 (100.0%)
- Yes
4 ( 2.6%)
48 (15.8%)
0 ( 0.0%)
entry
0.001
- Femoral
58 (37.9%)
133 (43.8%)
121 (30.2%)
- Radial
95 (62.1%)
171 (56.2%)
279 (69.8%)
EF
55.0 ± 9.3
52.4 ± 9.5
59.2 ± 8.7
< 0.001
height
163.3 ± 8.2
165.1 ± 8.2
161.7 ± 9.7
< 0.001
weight
64.3 ± 10.2
65.7 ± 11.6
64.5 ± 11.6
0.361
BMI
24.1 ± 3.2
24.0 ± 3.3
24.6 ± 3.4
0.064
obesity
0.186
- No
106 (69.3%)
209 (68.8%)
252 (63.0%)
- Yes
47 (30.7%)
95 (31.2%)
148 (37.0%)
TC
193.7 ± 53.6
183.2 ± 43.4
183.5 ± 48.3
0.057
LDLC
126.1 ± 44.7
116.7 ± 39.5
112.9 ± 40.4
0.004
HDLC
38.9 ± 11.9
38.5 ± 11.0
37.8 ± 10.9
0.501
TG
130.1 ± 88.5
106.5 ± 72.0
137.4 ± 101.6
< 0.001
DM
0.209
- No
96 (62.7%)
208 (68.4%)
249 (62.2%)
- Yes
57 (37.3%)
96 (31.6%)
151 (37.8%)
HBP
0.002
- No
62 (40.5%)
150 (49.3%)
144 (36.0%)
- Yes
91 (59.5%)
154 (50.7%)
256 (64.0%)
smoking
< 0.001
- Ex-smoker
42 (27.5%)
66 (21.7%)
96 (24.0%)
- Never
50 (32.7%)
97 (31.9%)
185 (46.2%)
- Smoker
61 (39.9%)
141 (46.4%)
119 (29.8%)
Plot
You can insert a plot into your document.
hist(rnorm(1000))
ggplot
You can insert a ggplot into a document
ggplot(iris,aes(x=Sepal.Length,y=Sepal.Width,color=Species))+ geom_point()
R code
You can insert the result of R code. For example, you can insert the result of regression analysis.
fit=lm(mpg~wt*hp,data=mtcars)
summary(fit)
Call:
lm(formula = mpg ~ wt * hp, data = mtcars)
Residuals:
Min 1Q Median 3Q Max
-3.0632 -1.6491 -0.7362 1.4211 4.5513
Coefficients:
Estimate Std. Error t value Pr(>|t|)
(Intercept) 49.80842 3.60516 13.816 5.01e-14 ***
wt -8.21662 1.26971 -6.471 5.20e-07 ***
hp -0.12010 0.02470 -4.863 4.04e-05 ***
wt:hp 0.02785 0.00742 3.753 0.000811 ***
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
Residual standard error: 2.153 on 28 degrees of freedom
Multiple R-squared: 0.8848, Adjusted R-squared: 0.8724
F-statistic: 71.66 on 3 and 28 DF, p-value: 2.981e-13
Two ggplots
You can insert two parallel ggplots with the following code.
ggplot(iris,aes(Sepal.Length,Sepal.Width))+geom_point()
ggplot(iris,aes(Sepal.Length,Sepal.Width,colour=Species))+ geom_point()+guides(colour=FALSE)
Two plots
You can insert two parallel plots with the following code.
hist(rnorm(1000))
plot(1:10)
HTML Report
You can get report with HTML format(this file) by following R command.
data2HTML(sampleData3)
MS word document
You can get a report with MS word format.
data2docx(sampleData3)
You can download sample data: sampleData3.docx - view with office web viewer
data2docx(sampleData2)
You can download sample data: sampleData2.docx - view with office web viewer
MS Powerpoint document
You can get a report with MS word format.
data2pptx(sampleData3)
You can download sample data: sampleData3.pptx - view with office web viewer
data2pptx(sampleData2)
You can download sample data: sampleData2.pptx - view with office web viewer
pdf document
You can get a report with pdf format.
data2pdf(sampleData3)
You can download sample data: sampleData3.pdf
data2pdf(sampleData2)
You can download sample data: sampleData2.pdf
cardiomoon/rrtable documentation built on March 14, 2023, 10:39 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
title: ' R package rrtable '
subtitle: ' Reproducible Research with a Table of R codes '
author: ' Keon-Woong Moon '
date: "2018-04-15"
output:
html_document:
keep_md: true
require(moonBook)
require(ztable)
require(rrtable)
require(ggplot2)
Introduction
If you are a data scientist or researcher, you will certainly be interested in reproducible research. R package rrtable makes it possible to make reports with HTML, LaTex, MS word or MS Powerpoint formats from a table of R codes.
Package Installation
You can install R package rrtable with the following command.
if(!require(devtools)){ install.packages("devtools") }
devtools::install_github("cardiomoon/rrtable")
Package Loading
You can load the rrtable package with the following R command.
require(rrtable)
Sample Data
Sample data sampleData3 is included in rrtable package. You can see the sampleData3 by following R command.
str(sampleData3)
'data.frame': 15 obs. of 5 variables:
$ type : chr "title" "subtitle" "author" "text" ...
$ title : chr "" "" "" "Introduction" ...
$ text : chr "R package `rrtable`" "Reproducible Research with a Table of R codes" "Keon-Woong Moon" "If you are a data scientist or researcher, you will certainly be interested in reproducible research. R package"| __truncated__ ...
$ code : chr "" "" "" "" ...
$ option: chr "" "" "" "" ...
Paragraph
You can make a paragraph with this data
df2flextable2( sampleData3 ,vanilla= FALSE )
type
title
text
code
option
title
R package `rrtable`
subtitle
Reproducible Research with a Table of R codes
author
Keon-Woong Moon
text
Introduction
If you are a data scientist or researcher, you will certainly be interested in reproducible research. R package `rrtable` makes it possible to make reports with HTML, LaTex, MS word or MS Powerpoint formats from a table of R codes.
header2
Package Installation
You can install R package `rrtable` with the following command.
if(!require(devtools)){ install.packages("devtools") } devtools::install_github("cardiomoon/rrtable")
echo=TRUE, eval=FALSE
header2
Package Loading
You can load the `rrtable` package with the following R command.
require(rrtable)
echo=TRUE
header2
Sample Data
Sample data sampleData3 is included in rrtable package. You can see the sampleData3 by following R command.
str(sampleData3)
echo=TRUE, eval=TRUE
Data
Paragraph
You can make a paragraph with this data
sampleData3
landscape=TRUE
mytable
mytable object
You can add mytable object with the following R code.
mytable(Dx~.,data=acs)
plot
Plot
You can insert a plot into your document.
plot(Sepal.Width~Sepal.Length,data=iris)
ggplot
ggplot
You can insert a ggplot into a document
ggplot(iris,aes(x=Sepal.Length,y=Sepal.Width,color=Species))+ geom_point()
Rcode
R code
You can insert the result of R code. For example, you can insert the result of regression analysis.
fit=lm(mpg~wt*hp,data=mtcars) summary(fit)
2ggplots
Two ggplots
You can insert two parallel ggplots with the following code.
ggplot(iris,aes(Sepal.Length,Sepal.Width))+geom_point() ggplot(iris,aes(Sepal.Length,Sepal.Width,colour=Species))+ geom_point()+guides(colour=FALSE)
2plots
Two plots
You can insert two parallel plots with the following code.
hist(rnorm(1000)) plot(1:10)
header2
HTML Report
You can get report with HTML format(this file) by following R command.
data2HTML(sampleData3)
echo=TRUE, eval=FALSE
mytable object
You can add mytable object with the following R code.
mytable2flextable( mytable(Dx~.,data=acs) ,vanilla= FALSE )
Dx
NSTEMI
STEMI
Unstable.Angina
p
(N=153)
(N=304)
(N=400)
age
64.3 ± 12.3
62.1 ± 12.1
63.8 ± 11.0
0.073
sex
0.012
- Female
50 (32.7%)
84 (27.6%)
153 (38.2%)
- Male
103 (67.3%)
220 (72.4%)
247 (61.8%)
cardiogenicShock
< 0.001
- No
149 (97.4%)
256 (84.2%)
400 (100.0%)
- Yes
4 ( 2.6%)
48 (15.8%)
0 ( 0.0%)
entry
0.001
- Femoral
58 (37.9%)
133 (43.8%)
121 (30.2%)
- Radial
95 (62.1%)
171 (56.2%)
279 (69.8%)
EF
55.0 ± 9.3
52.4 ± 9.5
59.2 ± 8.7
< 0.001
height
163.3 ± 8.2
165.1 ± 8.2
161.7 ± 9.7
< 0.001
weight
64.3 ± 10.2
65.7 ± 11.6
64.5 ± 11.6
0.361
BMI
24.1 ± 3.2
24.0 ± 3.3
24.6 ± 3.4
0.064
obesity
0.186
- No
106 (69.3%)
209 (68.8%)
252 (63.0%)
- Yes
47 (30.7%)
95 (31.2%)
148 (37.0%)
TC
193.7 ± 53.6
183.2 ± 43.4
183.5 ± 48.3
0.057
LDLC
126.1 ± 44.7
116.7 ± 39.5
112.9 ± 40.4
0.004
HDLC
38.9 ± 11.9
38.5 ± 11.0
37.8 ± 10.9
0.501
TG
130.1 ± 88.5
106.5 ± 72.0
137.4 ± 101.6
< 0.001
DM
0.209
- No
96 (62.7%)
208 (68.4%)
249 (62.2%)
- Yes
57 (37.3%)
96 (31.6%)
151 (37.8%)
HBP
0.002
- No
62 (40.5%)
150 (49.3%)
144 (36.0%)
- Yes
91 (59.5%)
154 (50.7%)
256 (64.0%)
smoking
< 0.001
- Ex-smoker
42 (27.5%)
66 (21.7%)
96 (24.0%)
- Never
50 (32.7%)
97 (31.9%)
185 (46.2%)
- Smoker
61 (39.9%)
141 (46.4%)
119 (29.8%)
Plot
You can insert a plot into your document.
hist(rnorm(1000))
ggplot
You can insert a ggplot into a document
ggplot(iris,aes(x=Sepal.Length,y=Sepal.Width,color=Species))+ geom_point()
R code
You can insert the result of R code. For example, you can insert the result of regression analysis.
fit=lm(mpg~wt*hp,data=mtcars)
summary(fit)
Call:
lm(formula = mpg ~ wt * hp, data = mtcars)
Residuals:
Min 1Q Median 3Q Max
-3.0632 -1.6491 -0.7362 1.4211 4.5513
Coefficients:
Estimate Std. Error t value Pr(>|t|)
(Intercept) 49.80842 3.60516 13.816 5.01e-14 ***
wt -8.21662 1.26971 -6.471 5.20e-07 ***
hp -0.12010 0.02470 -4.863 4.04e-05 ***
wt:hp 0.02785 0.00742 3.753 0.000811 ***
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
Residual standard error: 2.153 on 28 degrees of freedom
Multiple R-squared: 0.8848, Adjusted R-squared: 0.8724
F-statistic: 71.66 on 3 and 28 DF, p-value: 2.981e-13
Two ggplots
You can insert two parallel ggplots with the following code.
ggplot(iris,aes(Sepal.Length,Sepal.Width))+geom_point()
ggplot(iris,aes(Sepal.Length,Sepal.Width,colour=Species))+ geom_point()+guides(colour=FALSE)
Two plots
You can insert two parallel plots with the following code.
hist(rnorm(1000))
plot(1:10)
HTML Report
You can get report with HTML format(this file) by following R command.
data2HTML(sampleData3)
MS word document
You can get a report with MS word format.
data2docx(sampleData3)
You can download sample data: sampleData3.docx - view with office web viewer
data2docx(sampleData2)
You can download sample data: sampleData2.docx - view with office web viewer
MS Powerpoint document
You can get a report with MS word format.
data2pptx(sampleData3)
You can download sample data: sampleData3.pptx - view with office web viewer
data2pptx(sampleData2)
You can download sample data: sampleData2.pptx - view with office web viewer
pdf document
You can get a report with pdf format.
data2pdf(sampleData3)
You can download sample data: sampleData3.pdf
data2pdf(sampleData2)
You can download sample data: sampleData2.pdf
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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