Files in carinelegrand/RiboVIEW
Visualization, Quality and Statistics for Ribosome Profiling
DESCRIPTION
NAMESPACE
R/CLggseqlogo-col_schemes.R
R/CLggseqlogo-heights.R
R/CLggseqlogo.R
R/CLrecurr.R
R/CLvenn.diagram.R
R/TracyWidom.R
R/batch-effects.R
R/chx.artefacts.R
R/draft-plots-enrichment.r
R/enrichment.R
R/exploitfitrob.R
R/gtf2table.R
R/metageneExpl.R
R/metagene_monosome-peakAUG-leakage.R
R/nt-codon-freq.R
R/outputMine.R
R/outputQc.R
R/periodicity.R
R/permut-pca-mat.R
R/replicates.R
R/unionMat.R
R/visualisation.R
README
build/vignette.rds
inst/TracyWidom.py
inst/base64png.py
inst/covA.py
inst/doc/Intro_RiboVIEW.R
inst/doc/Intro_RiboVIEW.Rnw
inst/doc/Intro_RiboVIEW.pdf
inst/enrichment.py
inst/extdata/Cond1-Rep1.bam
inst/extdata/Cond1-Rep2.bam
inst/extdata/Cond1-Rep3.bam
inst/extdata/Cond2-Rep1.bam
inst/extdata/Cond2-Rep2.bam
inst/extdata/Cond2-Rep3.bam
inst/extdata/acgu-content.tsv
inst/extdata/akrobat_bold.font
inst/extdata/akrobat_regular.font
inst/extdata/codonColor.tsv
inst/extdata/example.gtf.gz
inst/extdata/helvetica_bold.font
inst/extdata/helvetica_light.font
inst/extdata/helvetica_regular.font
inst/extdata/output-style.css
inst/extdata/roboto_bold.font
inst/extdata/roboto_medium.font
inst/extdata/roboto_medium_orig.font
inst/extdata/roboto_regular.font
inst/extdata/roboto_slab_bold.font
inst/extdata/roboto_slab_light.font
inst/extdata/roboto_slab_regular.font
inst/extdata/synth.fasta
inst/extdata/synth.tsv
inst/extdata/xkcd_regular.font
inst/gtf2table.py
inst/metageneExpl.py
inst/periodicity.py
inst/unionMat.py
man/RiboVIEW-package.Rd
man/Venn.all.Rd
man/batch.effects.lm.e.Rd
man/batch.effects.pca.Rd
man/chx.artefacts.Rd
man/enrich.aroundA.Rd
man/enrichmentNoccupancy.Rd
man/generate.m.s.Rd
man/gtf2table.Rd
man/metagene.all.Rd
man/ntcodon.freq.cod.Rd
man/ntcodon.freq.nt.Rd
man/outputMine.Rd
man/outputQc.Rd
man/periodicity.Rd
man/repl.correl.codon.Rd
man/repl.correl.counts.Venn.Rd
man/repl.correl.gene.Rd
man/repl.correl.heatmap.Rd
man/select.FPlen.Rd
man/visu.m.s.enrichment.Rd
man/visu.tracks.Rd
vignettes/Intro_RiboVIEW.Rnw
vignettes/Intro_RiboVIEW.pdf
vignettes/appendix/synth-files_vignette.py
vignettes/appendix/workflow_SRA2BAM.bsh
vignettes/img/Batch-effects-lm-e.png
vignettes/img/Batch-effects_lm-mat_C1R1.png
vignettes/img/Enricht-all-zoom.png
vignettes/img/Metagene-leakage.png
vignettes/img/OL-1-1_small.png
vignettes/img/Periodicity_cond1-rep1_annot.png
vignettes/img/Replicates-heatmap.png
vignettes/img/RiboMine_tracks.png
vignettes/img/RiboQC-replicates-correl-genes.png
vignettes/img/Sample-cond1-rep1_OL_head.png
vignettes/img/SelectMAX.png
vignettes/img/SelectMin_small.png
vignettes/img/Visu-enrichmnt_compare-condition_cond1_relative-to_cond2.png
vignettes/img/chx-artefacts-Arg.png
