Man pages for carinelegrand/RiboVIEW
Visualization, Quality and Statistics for Ribosome Profiling
| batch.effects.lm.e | Apply a linear fit to codon enrichment with a, c, g or u as... |
| batch.effects.pca | Apply a PCA and tSNE to visualize batch effects or groups of... |
| chx.artefacts | Artefacts visible on codon enrichment, due to cycloheximide... |
| enrich.aroundA | Plot enrichment of all codons and all samples |
| enrichmentNoccupancy | Calculates unbiased codon enrichment, Hussmann's codon... |
| generate.m.s | Estimates codon enrichment mean, standard deviation and... |
| gtf2table | Convert an annotation file in GTF format in tabular format as... |
| metagene.all | Monosome selection, START and STOP leakage, metagene |
| ntcodon.freq.cod | Calculate codon counts at footprint boundaries and generates... |
| ntcodon.freq.nt | Calculate nt counts at footprint boundaries and generates... |
| outputMine | Web output to visualize mining results in RiboVIEW |
| outputQc | Web output to visualize quality control diagnostics in... |
| periodicity | Functions related to periodicity around AUG (periodicity and... |
| repl.correl.codon | Correlation of footprint coverage at codon resolution |
| repl.correl.counts.Venn | Venn Diagram for mRNA per sample |
| repl.correl.gene | Correlation of footprint coverage at gene resolution |
| repl.correl.heatmap | Adequation of replicates using a heatmap with hierarchical... |
| RiboVIEW-package | Visualization, quality control and statistical analysis of... |
| select.FPlen | Display periodicity plots for user selection of admissible... |
| Venn.all | Venn Diagram for mRNA per sample |
| visu.m.s.enrichment | Plot enrichment by condition and comparisons. |
| visu.tracks | Plot tracks of 1 mRNA over several samples |
