Man pages for carmen-maria-hernandez/SuCoNets
Development of supervidsed co-expression networks
| bestSeed | Calculates the best seed for GLMNET algorithm |
| calculateClusters | Calculates clusters by varying the size |
| calculateCorrelation | Calculate correlation |
| coexpressionNetworkFixed | Co-expression network with fixed cluster sizes |
| coexpressionNetworkVariable | Co-expression network with variable cluster sizes |
| comparisonActualPredictedCovariate | Comparison between real values of the covariate and predicted... |
| detectGenes | Detect main genes |
| distributionIndividualsCovariate | Distribution of individuals according to the covariate |
| glmnetGenes | Run GLMNET algorithm with the best seed |
| histGeneFreq | Histogram of gene frequencies |
| jaccardIndex | Calculate the Jaccard index |
| normalize | Normalize a vector |
| rRedundantPredictors | Remove redundant predictors |
| running.gprofiler | Running the function gprofiler |
| scn | Scaling, centering and normalizing a matrix |
| selectRows | Selects the indexes of the rows in x that match the rows in y |
| stabilitySelection | Study of the stability of the selection of genes with which... |
